Wall clock time and date at job start Mon Mar 30 2020 03:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08995 * 115.55691 * 205.58197 * 5 2 1 7 7 C 1.53006 * 117.49626 * 351.25654 * 5 2 1 8 8 C 1.53006 * 117.49504 * 59.91265 * 5 2 1 9 9 H 1.08995 * 117.49992 * 0.02562 * 8 5 2 10 10 C 1.53005 * 117.49707 * 145.02232 * 8 5 2 11 11 O 1.42899 * 109.46770 * 184.99932 * 10 8 5 12 12 C 1.42906 * 113.99441 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46781 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00288 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99697 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46982 * 90.00170 * 17 15 13 19 19 H 1.48500 * 109.46859 * 209.99504 * 17 15 13 20 20 H 1.48490 * 109.47325 * 329.99733 * 17 15 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.09003 * 117.49687 * 214.97219 * 7 5 2 31 31 H 1.08997 * 117.50080 * 359.97438 * 7 5 2 32 32 H 1.08996 * 109.46962 * 305.00004 * 10 8 5 33 33 H 1.09004 * 109.46909 * 65.00195 * 10 8 5 34 34 H 1.08998 * 109.47726 * 299.99936 * 12 11 10 35 35 H 1.08996 * 109.47151 * 60.00593 * 12 11 10 36 36 H 0.96997 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.0330 -1.1628 -1.1648 7 6 1.0108 -1.4566 -2.1101 8 6 1.6340 -0.1507 -2.6096 9 1 1.0040 0.7387 -2.6146 10 6 2.6528 -0.2441 -3.7473 11 8 2.1471 0.4383 -4.8966 12 6 3.0270 0.4113 -6.0223 13 6 2.3968 1.1569 -7.1703 14 1 1.4220 1.6067 -7.0520 15 6 3.0650 1.2658 -8.3714 16 7 2.5148 1.9160 -9.3735 17 14 4.7513 0.4884 -8.5758 18 1 4.5980 -0.9031 -9.0713 19 1 5.5447 1.2770 -9.5525 20 1 5.4514 0.4734 -7.2665 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 1.3268 -2.3816 -2.5923 31 1 -0.0295 -1.4268 -1.7863 32 1 3.5899 0.2163 -3.4345 33 1 2.8269 -1.2915 -3.9940 34 1 3.9718 0.8856 -5.7566 35 1 3.2093 -0.6223 -6.3163 36 1 2.9848 1.9923 -10.2186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703547399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:12 Heat of formation + Delta-G solvation = -44.388137 kcal Electronic energy + Delta-G solvation = -14099.722258 eV Core-core repulsion = 11777.191767 eV Total energy + Delta-G solvation = -2322.530491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27272 -36.71004 -34.05101 -32.55585 -28.51588 -27.47354 -27.34019 -25.79605 -22.83522 -21.81535 -20.46640 -18.37503 -16.92201 -16.04050 -15.28390 -14.84646 -14.60883 -14.25009 -14.07301 -13.59901 -12.79646 -12.68672 -12.43348 -12.31444 -11.92122 -11.73171 -11.63044 -11.24280 -11.02938 -10.97854 -10.81602 -10.67995 -10.38116 -9.91837 -9.79475 -9.63868 -9.17192 -8.80200 -8.44899 -6.11091 -4.10103 3.25069 3.31899 3.33708 3.84073 4.35660 4.37879 4.75301 4.81329 4.95496 5.10138 5.20265 5.22516 5.41639 5.47494 5.60604 5.61753 5.69894 5.72421 5.82560 5.84994 5.94741 5.96877 6.00548 6.07650 6.10791 6.24334 6.32862 6.35546 6.52068 6.62585 7.00464 7.60123 8.04242 8.68068 9.00460 9.48243 11.02009 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.058524 B = 0.005346 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.323527 B = 5235.885339 C = 5329.192310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.140 4.140 6 H 0.101 0.899 7 C -0.178 4.178 8 C -0.135 4.135 9 H 0.112 0.888 10 C 0.089 3.911 11 O -0.379 6.379 12 C 0.169 3.831 13 C -0.519 4.519 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.003 0.997 35 H -0.002 1.002 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -5.779 19.335 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.195 4.195 5 C -0.158 4.158 6 H 0.119 0.881 7 C -0.215 4.215 8 C -0.153 4.153 9 H 0.130 0.870 10 C 0.012 3.988 11 O -0.298 6.298 12 C 0.094 3.906 13 C -0.557 4.557 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.192 -5.623 19.128 19.938 hybrid contribution 1.207 -0.554 -0.325 1.367 sum 1.015 -6.177 18.803 19.817 Atomic orbital electron populations 1.22016 0.94748 1.01762 1.01773 1.20042 0.95285 0.95128 0.93354 1.21860 1.01108 0.95104 1.01763 1.21836 1.00863 1.00143 0.96610 1.22444 0.99288 1.03300 0.90786 0.88124 1.23316 0.98631 0.96144 1.03401 1.22255 1.01730 0.98143 0.93188 0.87006 1.21839 0.94689 0.95687 0.86622 1.87903 1.45571 1.75295 1.21068 1.20598 0.89989 0.95406 0.84641 1.20901 1.06333 1.34269 0.94203 0.89947 1.24764 0.97795 0.94996 0.95375 1.69875 1.38467 1.41812 1.03263 0.86849 0.84599 0.79804 0.78501 1.19905 1.20732 1.19119 0.92194 0.92897 0.92322 0.92982 0.92671 0.92080 0.92684 0.92746 0.92816 0.89122 0.88269 0.94121 0.94406 0.97948 0.98424 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.07 37.16 0.26 -1.18 16 2 C -0.04 -0.39 0.88 -154.51 -0.14 -0.53 16 3 C -0.14 -1.50 8.31 37.15 0.31 -1.19 16 4 C -0.14 -1.21 8.46 37.16 0.31 -0.90 16 5 C -0.14 -1.69 4.87 -90.61 -0.44 -2.13 16 6 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 7 C -0.18 -2.28 9.22 -26.69 -0.25 -2.53 16 8 C -0.14 -2.06 4.91 -90.57 -0.44 -2.51 16 9 H 0.11 1.81 7.07 -51.93 -0.37 1.44 16 10 C 0.09 1.65 6.22 37.16 0.23 1.88 16 11 O -0.38 -9.19 10.33 -35.23 -0.36 -9.56 16 12 C 0.17 4.42 4.76 36.01 0.17 4.59 16 13 C -0.52 -15.76 9.99 -34.44 -0.34 -16.11 16 14 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 15 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 16 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 17 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.55 6.97 -51.93 -0.36 0.19 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.72 7.29 -51.93 -0.38 0.35 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 31 H 0.10 1.16 5.85 -51.93 -0.30 0.85 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.66 7.88 -51.93 -0.41 0.26 16 34 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 16 35 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 36 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -31.39 289.06 -6.67 -38.05 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.34 Total: -4.14 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.42 Total: -18.53 kcal Atomic # 7 Polarization: -27.94 SS G_CDS: 0.77 Total: -27.16 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.36 Total: -9.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.39 -6.67 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703547399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.334 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds