Wall clock time and date at job start Mon Mar 30 2020 03:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08995 * 115.55691 * 205.58197 * 5 2 1 7 7 C 1.53006 * 117.49626 * 351.25654 * 5 2 1 8 8 C 1.53006 * 117.49504 * 59.91265 * 5 2 1 9 9 H 1.08995 * 117.49992 * 0.02562 * 8 5 2 10 10 C 1.53005 * 117.49707 * 145.02232 * 8 5 2 11 11 O 1.42899 * 109.46770 * 184.99932 * 10 8 5 12 12 C 1.42906 * 113.99441 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46781 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00086 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00288 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99697 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46982 * 90.00170 * 17 15 13 19 19 H 1.48500 * 109.46859 * 209.99504 * 17 15 13 20 20 H 1.48490 * 109.47325 * 329.99733 * 17 15 13 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.09003 * 117.49687 * 214.97219 * 7 5 2 31 31 H 1.08997 * 117.50080 * 359.97438 * 7 5 2 32 32 H 1.08996 * 109.46962 * 305.00004 * 10 8 5 33 33 H 1.09004 * 109.46909 * 65.00195 * 10 8 5 34 34 H 1.08998 * 109.47726 * 299.99936 * 12 11 10 35 35 H 1.08996 * 109.47151 * 60.00593 * 12 11 10 36 36 H 0.96997 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.0330 -1.1628 -1.1648 7 6 1.0108 -1.4566 -2.1101 8 6 1.6340 -0.1507 -2.6096 9 1 1.0040 0.7387 -2.6146 10 6 2.6528 -0.2441 -3.7473 11 8 2.1471 0.4383 -4.8966 12 6 3.0270 0.4113 -6.0223 13 6 2.3968 1.1569 -7.1703 14 1 1.4220 1.6067 -7.0520 15 6 3.0650 1.2658 -8.3714 16 7 2.5148 1.9160 -9.3735 17 14 4.7513 0.4884 -8.5758 18 1 4.5980 -0.9031 -9.0713 19 1 5.5447 1.2770 -9.5525 20 1 5.4514 0.4734 -7.2665 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 1.3268 -2.3816 -2.5923 31 1 -0.0295 -1.4268 -1.7863 32 1 3.5899 0.2163 -3.4345 33 1 2.8269 -1.2915 -3.9940 34 1 3.9718 0.8856 -5.7566 35 1 3.2093 -0.6223 -6.3163 36 1 2.9848 1.9923 -10.2186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703547399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:12 Heat of formation + Delta-G solvation = -63.484610 kcal Electronic energy + Delta-G solvation = -14100.550343 eV Core-core repulsion = 11777.191767 eV Total energy + Delta-G solvation = -2323.358576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31036 -38.42313 -35.23688 -34.67518 -30.52310 -28.40628 -28.08723 -27.27222 -23.97454 -23.76371 -21.70927 -19.29915 -19.09076 -17.44030 -16.95638 -16.54310 -16.07596 -15.68038 -14.92370 -14.74137 -14.52650 -14.08972 -13.80853 -13.36426 -13.11235 -13.04412 -12.74777 -12.64585 -12.50183 -12.16998 -11.87463 -11.83776 -11.76060 -11.44629 -11.40691 -11.07110 -10.85238 -10.72764 -10.26839 -8.39941 -6.48699 1.31666 1.35134 1.46188 2.27627 2.69141 2.92395 3.07213 3.76238 3.89300 3.95827 4.08854 4.27516 4.31201 4.39086 4.47435 4.62636 4.66676 4.73895 4.80794 4.86841 4.87831 4.95434 4.95886 5.08433 5.12236 5.19269 5.24050 5.28798 5.39509 5.41032 5.50775 5.57919 5.91810 6.55161 6.72055 7.16059 8.77372 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.058524 B = 0.005346 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.323527 B = 5235.885339 C = 5329.192310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.116 4.116 6 H 0.111 0.889 7 C -0.171 4.171 8 C -0.163 4.163 9 H 0.094 0.906 10 C 0.084 3.916 11 O -0.408 6.408 12 C 0.179 3.821 13 C -0.550 4.550 14 H 0.029 0.971 15 C 0.014 3.986 16 N -0.941 5.941 17 Si 0.957 3.043 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.247 1.247 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -7.493 21.048 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.191 4.191 5 C -0.134 4.134 6 H 0.129 0.871 7 C -0.207 4.207 8 C -0.181 4.181 9 H 0.112 0.888 10 C 0.007 3.993 11 O -0.328 6.328 12 C 0.103 3.897 13 C -0.588 4.588 14 H 0.047 0.953 15 C -0.184 4.184 16 N -0.581 5.581 17 Si 0.778 3.222 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.170 1.170 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.592 -7.339 20.867 22.177 hybrid contribution 0.525 0.040 -0.827 0.980 sum 2.117 -7.299 20.040 21.433 Atomic orbital electron populations 1.22014 0.94456 1.02208 1.01611 1.20110 0.95592 0.94885 0.93372 1.21862 1.01152 0.95375 1.01481 1.21803 1.01109 1.00307 0.95859 1.22567 0.99600 1.01525 0.89685 0.87147 1.23419 0.99582 0.94902 1.02837 1.22108 1.02468 0.99120 0.94422 0.88767 1.22130 0.95989 0.95756 0.85415 1.87862 1.46167 1.76536 1.22249 1.20332 0.89901 0.95290 0.84143 1.21166 1.05004 1.35666 0.96940 0.95296 1.25857 1.03063 0.95108 0.94356 1.70029 1.40914 1.42976 1.04139 0.85587 0.77859 0.79202 0.79570 1.18195 1.19546 1.17009 0.93854 0.91631 0.91545 0.91531 0.92585 0.94134 0.92097 0.92369 0.91683 0.88577 0.87230 0.93300 0.93173 0.96998 0.97031 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.07 71.98 0.51 -2.13 16 2 C -0.04 -0.74 0.88 -52.18 -0.05 -0.78 16 3 C -0.14 -2.82 8.31 71.98 0.60 -2.22 16 4 C -0.13 -1.94 8.46 71.98 0.61 -1.33 16 5 C -0.12 -2.57 4.87 -10.79 -0.05 -2.62 16 6 H 0.11 2.27 8.11 -2.39 -0.02 2.25 16 7 C -0.17 -4.10 9.22 30.62 0.28 -3.81 16 8 C -0.16 -4.92 4.91 -10.76 -0.05 -4.97 16 9 H 0.09 3.17 7.07 -2.39 -0.02 3.15 16 10 C 0.08 3.04 6.22 71.98 0.45 3.48 16 11 O -0.41 -20.15 10.33 -148.98 -1.54 -21.69 16 12 C 0.18 9.35 4.76 71.24 0.34 9.68 16 13 C -0.55 -34.53 9.99 25.60 0.26 -34.28 16 14 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 15 C 0.01 0.86 5.47 84.65 0.46 1.32 16 16 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.96 43.88 27.47 68.60 1.88 45.77 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 21 H 0.04 0.92 7.07 -2.39 -0.02 0.90 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.09 6.97 -2.38 -0.02 1.07 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 0.96 7.29 -2.39 -0.02 0.95 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 2.21 8.03 -2.39 -0.02 2.19 16 31 H 0.11 2.38 5.85 -2.39 -0.01 2.37 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.68 7.88 -2.39 -0.02 1.66 16 34 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 35 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 36 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -69.55 289.06 4.96 -64.59 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.96 Total: 8.74 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 3.35 Total: -37.65 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.30 Total: -59.76 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -1.54 Total: -21.69 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -69.55 4.96 -64.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703547399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.107 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds