Wall clock time and date at job start Mon Mar 30 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99924 * 2 1 4 4 C 1.50698 * 109.46636 * 66.04688 * 3 2 1 5 5 H 1.08002 * 120.00370 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99689 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99889 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99926 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47115 * 89.99619 * 8 6 4 10 10 H 1.48497 * 109.46937 * 209.99973 * 8 6 4 11 11 H 1.48501 * 109.46823 * 329.99711 * 8 6 4 12 12 C 1.46902 * 111.00060 * 236.04860 * 2 1 3 13 13 C 1.53786 * 113.61560 * 289.29338 * 12 2 1 14 14 C 1.53781 * 87.08173 * 220.01960 * 13 12 2 15 15 C 1.50698 * 113.61283 * 139.98134 * 14 13 12 16 16 N 1.34770 * 120.00167 * 82.49986 * 15 14 13 17 17 O 1.21285 * 119.99815 * 262.50098 * 15 14 13 18 18 C 1.53782 * 113.61445 * 191.79395 * 12 2 1 19 19 H 1.09006 * 109.46916 * 54.80332 * 1 2 3 20 20 H 1.09002 * 109.46914 * 174.79380 * 1 2 3 21 21 H 1.08997 * 109.47390 * 294.80227 * 1 2 3 22 22 H 1.08994 * 109.46894 * 306.04515 * 3 2 1 23 23 H 1.09001 * 109.46728 * 186.04323 * 3 2 1 24 24 H 0.96997 * 119.99743 * 179.97438 * 7 6 4 25 25 H 1.09001 * 112.85253 * 60.59828 * 12 2 1 26 26 H 1.08997 * 113.61296 * 334.56928 * 13 12 2 27 27 H 1.08999 * 113.61327 * 105.46761 * 13 12 2 28 28 H 1.08994 * 113.61468 * 270.88517 * 14 13 12 29 29 H 0.97002 * 119.99835 * 0.02562 * 16 15 14 30 30 H 0.97003 * 120.00414 * 179.97438 * 16 15 14 31 31 H 1.08993 * 113.61545 * 254.53098 * 18 12 2 32 32 H 1.09004 * 113.61440 * 25.43760 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5829 4.1867 3.1384 9 1 2.6603 3.9505 4.1326 10 1 1.4299 5.6463 2.9114 11 1 0.3056 3.6288 3.6507 12 6 1.9955 -0.7659 -1.1376 13 6 1.7816 -2.2835 -1.0104 14 6 3.1943 -2.4522 -1.5941 15 6 3.9922 -3.5486 -0.9366 16 7 3.8223 -4.8290 -1.3211 17 8 4.7873 -3.2786 -0.0614 18 6 3.5039 -1.0500 -1.0438 19 1 -0.3633 0.5924 -0.8398 20 1 -0.3633 -1.0235 -0.0933 21 1 -0.3634 0.4311 0.9328 22 1 1.5611 1.9273 -0.8309 23 1 3.0798 1.3444 -0.1082 24 1 2.9858 4.9183 0.7767 25 1 1.6868 -0.3595 -2.1008 26 1 1.6912 -2.6268 0.0202 27 1 0.9931 -2.6690 -1.6567 28 1 3.2132 -2.5080 -2.6825 29 1 3.1867 -5.0449 -2.0213 30 1 4.3362 -5.5348 -0.8981 31 1 4.1058 -0.4397 -1.7171 32 1 3.8844 -1.0561 -0.0223 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704312628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:12 Heat of formation + Delta-G solvation = -20.970841 kcal Electronic energy + Delta-G solvation = -14167.008228 eV Core-core repulsion = 11741.952844 eV Total energy + Delta-G solvation = -2425.055384 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04772 -37.76892 -34.60611 -33.54172 -32.21344 -27.38585 -26.45501 -25.17903 -23.93830 -21.56591 -19.90394 -18.91181 -17.31497 -16.64700 -16.25041 -15.28969 -14.86056 -14.42790 -14.23197 -13.53167 -13.36165 -12.84966 -12.08379 -11.92805 -11.42927 -11.40555 -10.95794 -10.85357 -10.77543 -10.47958 -10.36746 -10.05540 -9.68795 -9.67151 -9.56737 -9.09671 -8.37349 -7.20642 -5.97123 -3.97880 2.74690 3.36653 3.42192 3.45666 3.60001 4.47503 4.72614 4.82608 4.96759 5.18046 5.31040 5.36437 5.40356 5.80178 5.89770 6.12588 6.19337 6.30811 6.40443 6.55700 6.71871 6.77395 6.88870 7.35558 7.38913 7.39434 7.86850 8.16640 8.25710 8.35692 8.62303 9.09730 9.66001 11.13955 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047554 B = 0.006755 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.668837 B = 4143.850453 C = 4333.520189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.056 3.944 13 C -0.108 4.108 14 C -0.144 4.144 15 C 0.528 3.472 16 N -0.861 5.861 17 O -0.537 6.537 18 C -0.099 4.099 19 H 0.012 0.988 20 H 0.043 0.957 21 H 0.070 0.930 22 H -0.011 1.011 23 H 0.033 0.967 24 H 0.260 0.740 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.399 0.601 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -14.600 -6.961 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.053 4.053 13 C -0.147 4.147 14 C -0.166 4.166 15 C 0.314 3.686 16 N -0.424 5.424 17 O -0.412 6.412 18 C -0.137 4.137 19 H 0.030 0.970 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.007 0.993 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.085 0.915 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.170 -14.259 -6.008 15.518 hybrid contribution -0.568 0.517 -0.225 0.800 sum -1.738 -13.743 -6.233 15.190 Atomic orbital electron populations 1.22142 0.89048 0.98599 1.01057 1.62367 1.06690 1.18034 1.38284 1.19724 0.95744 0.81386 0.96440 1.21175 1.34664 0.96867 1.01736 0.91935 1.24987 0.95362 0.97370 0.96931 1.69961 1.38534 1.11415 1.34032 0.86503 0.78839 0.78355 0.83738 1.20620 1.21382 1.19910 1.22952 0.95792 0.92816 0.93747 1.22920 0.93008 0.97169 1.01568 1.22684 0.97898 0.95386 1.00601 1.20607 0.82026 0.83734 0.82278 1.43925 1.46483 1.08666 1.43341 1.90751 1.36282 1.83023 1.31170 1.22852 0.96169 0.91526 1.03190 0.96960 0.93863 0.91089 0.99301 0.94852 0.92994 0.92761 0.88983 0.91589 0.87400 0.77304 0.77370 0.91478 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.27 60.07 0.56 1.34 16 2 N -0.53 -11.62 4.69 -235.34 -1.10 -12.73 16 3 C 0.19 5.12 4.65 -4.97 -0.02 5.09 16 4 C -0.51 -14.56 8.58 -34.44 -0.30 -14.86 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.06 1.00 3.17 -66.90 -0.21 0.79 16 13 C -0.11 -1.50 6.62 -25.92 -0.17 -1.67 16 14 C -0.14 -1.90 4.15 -90.96 -0.38 -2.27 16 15 C 0.53 7.35 7.63 -10.99 -0.08 7.27 16 16 N -0.86 -7.63 8.87 31.22 0.28 -7.36 16 17 O -0.54 -10.15 16.74 5.55 0.09 -10.05 16 18 C -0.10 -1.74 6.24 -25.91 -0.16 -1.91 16 19 H 0.01 0.23 8.08 -51.93 -0.42 -0.18 16 20 H 0.04 0.70 7.44 -51.93 -0.39 0.32 16 21 H 0.07 1.48 7.01 -51.93 -0.36 1.12 16 22 H -0.01 -0.31 8.07 -51.93 -0.42 -0.73 16 23 H 0.03 0.95 7.31 -51.93 -0.38 0.57 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 30 H 0.40 3.09 8.93 -40.82 -0.36 2.73 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.11 2.20 7.43 -51.93 -0.39 1.81 16 LS Contribution 269.37 15.07 4.06 4.06 Total: -1.00 -33.71 269.37 -6.52 -40.23 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.70 Total: 0.00 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.87 Total: -4.73 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.09 Total: -46.61 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.71 -6.52 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704312628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.263 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds