Wall clock time and date at job start Mon Mar 30 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99924 * 2 1 4 4 C 1.50698 * 109.46636 * 66.04688 * 3 2 1 5 5 H 1.08002 * 120.00370 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99689 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99889 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99926 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47115 * 89.99619 * 8 6 4 10 10 H 1.48497 * 109.46937 * 209.99973 * 8 6 4 11 11 H 1.48501 * 109.46823 * 329.99711 * 8 6 4 12 12 C 1.46902 * 111.00060 * 236.04860 * 2 1 3 13 13 C 1.53786 * 113.61560 * 289.29338 * 12 2 1 14 14 C 1.53781 * 87.08173 * 220.01960 * 13 12 2 15 15 C 1.50698 * 113.61283 * 139.98134 * 14 13 12 16 16 N 1.34770 * 120.00167 * 82.49986 * 15 14 13 17 17 O 1.21285 * 119.99815 * 262.50098 * 15 14 13 18 18 C 1.53782 * 113.61445 * 191.79395 * 12 2 1 19 19 H 1.09006 * 109.46916 * 54.80332 * 1 2 3 20 20 H 1.09002 * 109.46914 * 174.79380 * 1 2 3 21 21 H 1.08997 * 109.47390 * 294.80227 * 1 2 3 22 22 H 1.08994 * 109.46894 * 306.04515 * 3 2 1 23 23 H 1.09001 * 109.46728 * 186.04323 * 3 2 1 24 24 H 0.96997 * 119.99743 * 179.97438 * 7 6 4 25 25 H 1.09001 * 112.85253 * 60.59828 * 12 2 1 26 26 H 1.08997 * 113.61296 * 334.56928 * 13 12 2 27 27 H 1.08999 * 113.61327 * 105.46761 * 13 12 2 28 28 H 1.08994 * 113.61468 * 270.88517 * 14 13 12 29 29 H 0.97002 * 119.99835 * 0.02562 * 16 15 14 30 30 H 0.97003 * 120.00414 * 179.97438 * 16 15 14 31 31 H 1.08993 * 113.61545 * 254.53098 * 18 12 2 32 32 H 1.09004 * 113.61440 * 25.43760 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5829 4.1867 3.1384 9 1 2.6603 3.9505 4.1326 10 1 1.4299 5.6463 2.9114 11 1 0.3056 3.6288 3.6507 12 6 1.9955 -0.7659 -1.1376 13 6 1.7816 -2.2835 -1.0104 14 6 3.1943 -2.4522 -1.5941 15 6 3.9922 -3.5486 -0.9366 16 7 3.8223 -4.8290 -1.3211 17 8 4.7873 -3.2786 -0.0614 18 6 3.5039 -1.0500 -1.0438 19 1 -0.3633 0.5924 -0.8398 20 1 -0.3633 -1.0235 -0.0933 21 1 -0.3634 0.4311 0.9328 22 1 1.5611 1.9273 -0.8309 23 1 3.0798 1.3444 -0.1082 24 1 2.9858 4.9183 0.7767 25 1 1.6868 -0.3595 -2.1008 26 1 1.6912 -2.6268 0.0202 27 1 0.9931 -2.6690 -1.6567 28 1 3.2132 -2.5080 -2.6825 29 1 3.1867 -5.0449 -2.0213 30 1 4.3362 -5.5348 -0.8981 31 1 4.1058 -0.4397 -1.7171 32 1 3.8844 -1.0561 -0.0223 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704312628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:12 Heat of formation + Delta-G solvation = -48.612147 kcal Electronic energy + Delta-G solvation = -14168.206845 eV Core-core repulsion = 11741.952844 eV Total energy + Delta-G solvation = -2426.254001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25773 -39.12825 -36.31135 -34.57995 -34.27413 -29.39701 -27.85616 -26.56059 -25.59760 -23.31804 -21.19903 -20.22141 -18.58206 -18.21887 -17.70267 -16.70315 -16.51284 -16.05646 -15.53216 -15.24207 -14.84825 -14.48186 -13.86952 -13.40102 -13.18924 -12.97522 -12.69209 -12.49674 -12.39606 -12.21603 -12.02026 -11.79054 -11.27205 -11.05383 -10.77739 -10.60749 -10.59941 -8.98045 -8.20120 -6.30071 1.39710 1.42375 1.52851 1.66153 2.40359 2.66049 3.12305 3.43474 3.54145 3.69046 3.85718 4.06719 4.35528 4.52381 4.66467 4.74440 4.82954 4.90714 5.04766 5.09598 5.15290 5.23260 5.36794 5.45361 5.68240 5.97025 6.09262 6.36833 6.55059 6.72998 6.86881 7.39605 7.43923 8.91131 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047554 B = 0.006755 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.668837 B = 4143.850453 C = 4333.520189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.043 3.957 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.525 3.475 16 N -0.831 5.831 17 O -0.597 6.597 18 C -0.116 4.116 19 H 0.010 0.990 20 H 0.084 0.916 21 H 0.051 0.949 22 H -0.039 1.039 23 H 0.002 0.998 24 H 0.264 0.736 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.152 0.848 29 H 0.420 0.580 30 H 0.406 0.594 31 H 0.060 0.940 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -16.440 -7.571 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.083 3.917 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.187 1.187 12 C -0.066 4.066 13 C -0.126 4.126 14 C -0.142 4.142 15 C 0.311 3.689 16 N -0.395 5.395 17 O -0.478 6.478 18 C -0.154 4.154 19 H 0.028 0.972 20 H 0.102 0.898 21 H 0.070 0.930 22 H -0.021 1.021 23 H 0.021 0.979 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.252 0.748 30 H 0.237 0.763 31 H 0.079 0.921 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.624 -16.171 -6.661 17.685 hybrid contribution -0.110 1.029 -0.100 1.039 sum -2.733 -15.142 -6.761 16.807 Atomic orbital electron populations 1.22145 0.87440 1.00938 0.99949 1.62260 1.08237 1.15233 1.41032 1.19325 0.93771 0.83945 0.94708 1.21514 1.34794 0.97528 1.02530 0.92092 1.25935 0.95037 0.98089 1.00734 1.70090 1.39455 1.11872 1.36195 0.85378 0.78934 0.77334 0.78938 1.20152 1.20511 1.18687 1.23206 0.95697 0.95027 0.92691 1.22795 0.94715 0.93246 1.01839 1.22620 0.96740 0.92152 1.02668 1.20712 0.81401 0.85249 0.81554 1.43642 1.45950 1.07046 1.42854 1.90742 1.39051 1.84086 1.33905 1.22796 0.96178 0.95369 1.01084 0.97186 0.89751 0.93001 1.02093 0.97950 0.92715 0.91732 0.90505 0.87047 0.83081 0.74817 0.76321 0.92088 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.27 127.69 1.18 2.85 16 2 N -0.54 -24.15 4.69 -898.47 -4.22 -28.36 16 3 C 0.21 11.62 4.65 85.56 0.40 12.02 16 4 C -0.53 -31.10 8.58 25.60 0.22 -30.88 16 5 H 0.06 3.54 7.10 -2.91 -0.02 3.52 16 6 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 7 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 8 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.04 1.48 3.17 45.44 0.14 1.62 16 13 C -0.09 -2.15 6.62 31.12 0.21 -1.95 16 14 C -0.12 -2.87 4.15 -11.01 -0.05 -2.91 16 15 C 0.53 13.67 7.63 87.66 0.67 14.33 16 16 N -0.83 -11.92 8.87 -173.54 -1.54 -13.46 16 17 O -0.60 -22.83 16.74 -3.05 -0.05 -22.89 16 18 C -0.12 -4.16 6.24 31.12 0.19 -3.96 16 19 H 0.01 0.37 8.08 -2.38 -0.02 0.35 16 20 H 0.08 2.51 7.44 -2.39 -0.02 2.49 16 21 H 0.05 2.15 7.01 -2.39 -0.02 2.14 16 22 H -0.04 -2.30 8.07 -2.39 -0.02 -2.32 16 23 H 0.00 0.14 7.31 -2.39 -0.02 0.13 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.42 2.70 8.83 -92.71 -0.82 1.88 16 30 H 0.41 5.13 8.93 -92.71 -0.83 4.30 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 2.80 7.43 -2.38 -0.02 2.78 16 Total: -1.00 -77.46 269.37 -0.59 -78.05 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -0.52 Total: 5.15 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 3.43 Total: -8.44 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.47 Total: -99.75 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.46 -0.59 -78.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704312628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.434 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds