Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 120.00290 * 2 1 4 4 O 1.21282 * 119.99573 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46552 * 299.99883 * 5 3 2 7 7 C 1.53000 * 109.46984 * 59.99648 * 5 3 2 8 8 N 1.46494 * 109.46993 * 180.02562 * 5 3 2 9 9 C 1.36935 * 120.00129 * 121.56019 * 8 5 3 10 10 H 1.08002 * 119.99969 * 212.87420 * 9 8 5 11 11 C 1.38807 * 120.00046 * 32.87315 * 9 8 5 12 12 N 1.31618 * 120.00189 * 17.34111 * 11 9 8 13 13 Si 1.86805 * 119.99992 * 197.33904 * 11 9 8 14 14 H 1.48503 * 109.46945 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46783 * 119.99712 * 13 11 9 16 16 H 1.48493 * 109.47236 * 239.99744 * 13 11 9 17 17 C 1.46505 * 120.00020 * 301.55424 * 8 5 3 18 18 C 1.52999 * 117.49961 * 193.78537 * 17 8 5 19 19 C 1.53001 * 117.49720 * 125.12298 * 17 8 5 20 20 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47109 * 300.00396 * 1 2 3 22 22 H 1.09008 * 109.46697 * 60.00462 * 1 2 3 23 23 H 0.97006 * 119.99978 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46667 * 180.02562 * 7 5 3 25 25 H 1.08996 * 109.47389 * 299.99836 * 7 5 3 26 26 H 1.08991 * 109.47113 * 60.00221 * 7 5 3 27 27 H 0.97002 * 120.00062 * 184.98615 * 12 11 9 28 28 H 1.09000 * 115.54732 * 339.45349 * 17 8 5 29 29 H 1.08999 * 117.49615 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.49867 * 145.02431 * 18 17 8 31 31 H 1.09007 * 117.49397 * 214.98025 * 19 17 8 32 32 H 1.08995 * 117.49929 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0089 0.6535 0.8909 7 6 4.1564 0.4455 -1.2483 8 7 4.1343 2.5483 0.0011 9 6 4.9473 2.9867 1.0120 10 1 4.8930 4.0138 1.3417 11 6 5.8412 2.1112 1.6129 12 7 6.1607 0.9833 1.0146 13 14 6.5908 2.5338 3.2710 14 1 6.0722 3.8481 3.7281 15 1 6.2268 1.4874 4.2599 16 1 8.0687 2.6014 3.1432 17 6 3.7529 3.4605 -1.0800 18 6 4.5343 4.7696 -1.2084 19 6 3.0948 4.7849 -0.6877 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.9501 -0.8401 0.0004 24 1 5.2465 0.4451 -1.2476 25 1 3.7931 -0.5821 -1.2481 26 1 3.7935 0.9591 -2.1384 27 1 6.7280 0.3386 1.4657 28 1 3.4151 2.9837 -2.0002 29 1 5.3318 4.9524 -0.4883 30 1 4.7100 5.1544 -2.2130 31 1 2.3243 5.1796 -1.3501 32 1 2.9453 4.9773 0.3746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706765675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = 14.249235 kcal Electronic energy + Delta-G solvation = -14948.095978 eV Core-core repulsion = 12524.567851 eV Total energy + Delta-G solvation = -2423.528127 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95822 -36.68058 -33.83683 -33.70519 -31.40217 -28.76856 -26.25618 -24.23589 -22.67224 -21.16749 -20.15876 -19.21321 -16.97876 -16.09805 -15.21153 -14.79161 -14.56125 -14.21112 -13.76436 -12.90228 -12.64827 -12.49551 -11.98377 -11.94576 -11.54394 -11.20348 -10.95503 -10.79303 -10.60294 -10.44385 -10.21940 -9.86930 -9.48739 -9.14176 -8.72561 -8.51687 -8.41129 -6.56639 -5.86860 -3.36576 3.32976 3.42495 3.46724 3.60841 3.91778 4.45176 5.10234 5.23672 5.37339 5.45307 5.79397 5.88238 6.04477 6.10669 6.22523 6.30079 6.44615 6.47907 6.63197 6.66612 6.80189 7.01495 7.14981 7.22193 7.30780 7.43626 7.79268 8.15121 8.42297 9.02479 9.20631 9.75840 10.30290 11.16479 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.013176 C = 0.010574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.295252 B = 2124.517246 C = 2647.350731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.750 5.750 3 C 0.484 3.516 4 O -0.532 6.532 5 C 0.177 3.823 6 H 0.118 0.882 7 C -0.140 4.140 8 N -0.533 5.533 9 C -0.248 4.248 10 H 0.068 0.932 11 C 0.007 3.993 12 N -0.895 5.895 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.289 1.289 17 C 0.145 3.855 18 C -0.206 4.206 19 C -0.205 4.205 20 H 0.064 0.936 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.396 0.604 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.254 0.746 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -3.680 -2.955 7.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.405 5.405 3 C 0.271 3.729 4 O -0.407 6.407 5 C 0.066 3.934 6 H 0.135 0.865 7 C -0.200 4.200 8 N -0.249 5.249 9 C -0.377 4.377 10 H 0.085 0.915 11 C -0.191 4.191 12 N -0.538 5.538 13 Si 0.729 3.271 14 H -0.201 1.201 15 H -0.215 1.215 16 H -0.215 1.215 17 C 0.036 3.964 18 C -0.245 4.245 19 C -0.246 4.246 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.229 0.771 24 H 0.107 0.893 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.134 -2.996 -2.908 7.420 hybrid contribution 0.445 -0.291 0.930 1.071 sum -5.688 -3.286 -1.978 6.861 Atomic orbital electron populations 1.21359 0.81714 1.00854 1.01462 1.46183 1.06557 1.09502 1.78234 1.23035 0.92987 0.82826 0.74091 1.90605 1.70669 1.31316 1.48103 1.20225 0.84658 0.87877 1.00627 0.86484 1.22058 1.04412 0.96936 0.96550 1.43035 1.52390 1.06572 1.22860 1.19131 1.11310 0.97295 1.09994 0.91454 1.25098 0.96065 0.98251 0.99733 1.70045 1.38181 1.10265 1.35353 0.86265 0.78657 0.78112 0.84033 1.20121 1.21483 1.21541 1.20750 0.99261 0.84742 0.91599 1.23211 0.95553 1.05012 1.00696 1.23145 0.93804 1.07046 1.00594 0.91761 0.93105 0.93143 0.77056 0.89337 0.94580 0.94954 0.93566 0.89948 0.88526 0.90963 0.91258 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.70 59.85 0.64 1.89 16 2 N -0.75 -12.27 5.61 -67.08 -0.38 -12.65 16 3 C 0.48 10.32 7.05 -10.98 -0.08 10.24 16 4 O -0.53 -13.00 14.89 5.56 0.08 -12.92 16 5 C 0.18 4.04 2.18 -69.09 -0.15 3.89 16 6 H 0.12 2.91 6.09 -51.93 -0.32 2.60 16 7 C -0.14 -2.84 8.96 37.16 0.33 -2.50 16 8 N -0.53 -13.48 2.50 -159.45 -0.40 -13.88 16 9 C -0.25 -6.73 8.27 -15.06 -0.12 -6.85 16 10 H 0.07 1.87 6.98 -52.49 -0.37 1.51 16 11 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 12 N -0.90 -23.97 10.45 55.49 0.58 -23.39 16 13 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.15 3.38 4.75 -67.93 -0.32 3.06 16 18 C -0.21 -4.41 9.79 -26.69 -0.26 -4.67 16 19 C -0.21 -4.51 9.72 -26.69 -0.26 -4.77 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.40 5.44 8.25 -40.82 -0.34 5.11 16 24 H 0.09 2.02 7.25 -51.93 -0.38 1.64 16 25 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 26 H 0.03 0.63 6.98 -51.93 -0.36 0.26 16 27 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 28 H 0.08 1.85 7.04 -51.93 -0.37 1.48 16 29 H 0.10 2.22 6.84 -51.93 -0.35 1.86 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.99 8.06 -51.93 -0.42 1.57 16 LS Contribution 264.71 15.07 3.99 3.99 Total: -1.00 -30.02 264.71 -6.00 -36.01 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.54 Total: 6.20 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.31 Total: 0.40 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.20 Total: -49.92 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.02 -6.00 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706765675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.264 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds