Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 120.00290 * 2 1 4 4 O 1.21282 * 119.99573 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46552 * 299.99883 * 5 3 2 7 7 C 1.53000 * 109.46984 * 59.99648 * 5 3 2 8 8 N 1.46494 * 109.46993 * 180.02562 * 5 3 2 9 9 C 1.36935 * 120.00129 * 121.56019 * 8 5 3 10 10 H 1.08002 * 119.99969 * 212.87420 * 9 8 5 11 11 C 1.38807 * 120.00046 * 32.87315 * 9 8 5 12 12 N 1.31618 * 120.00189 * 17.34111 * 11 9 8 13 13 Si 1.86805 * 119.99992 * 197.33904 * 11 9 8 14 14 H 1.48503 * 109.46945 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46783 * 119.99712 * 13 11 9 16 16 H 1.48493 * 109.47236 * 239.99744 * 13 11 9 17 17 C 1.46505 * 120.00020 * 301.55424 * 8 5 3 18 18 C 1.52999 * 117.49961 * 193.78537 * 17 8 5 19 19 C 1.53001 * 117.49720 * 125.12298 * 17 8 5 20 20 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47109 * 300.00396 * 1 2 3 22 22 H 1.09008 * 109.46697 * 60.00462 * 1 2 3 23 23 H 0.97006 * 119.99978 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46667 * 180.02562 * 7 5 3 25 25 H 1.08996 * 109.47389 * 299.99836 * 7 5 3 26 26 H 1.08991 * 109.47113 * 60.00221 * 7 5 3 27 27 H 0.97002 * 120.00062 * 184.98615 * 12 11 9 28 28 H 1.09000 * 115.54732 * 339.45349 * 17 8 5 29 29 H 1.08999 * 117.49615 * 359.97438 * 18 17 8 30 30 H 1.08998 * 117.49867 * 145.02431 * 18 17 8 31 31 H 1.09007 * 117.49397 * 214.98025 * 19 17 8 32 32 H 1.08995 * 117.49929 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0089 0.6535 0.8909 7 6 4.1564 0.4455 -1.2483 8 7 4.1343 2.5483 0.0011 9 6 4.9473 2.9867 1.0120 10 1 4.8930 4.0138 1.3417 11 6 5.8412 2.1112 1.6129 12 7 6.1607 0.9833 1.0146 13 14 6.5908 2.5338 3.2710 14 1 6.0722 3.8481 3.7281 15 1 6.2268 1.4874 4.2599 16 1 8.0687 2.6014 3.1432 17 6 3.7529 3.4605 -1.0800 18 6 4.5343 4.7696 -1.2084 19 6 3.0948 4.7849 -0.6877 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.9501 -0.8401 0.0004 24 1 5.2465 0.4451 -1.2476 25 1 3.7931 -0.5821 -1.2481 26 1 3.7935 0.9591 -2.1384 27 1 6.7280 0.3386 1.4657 28 1 3.4151 2.9837 -2.0002 29 1 5.3318 4.9524 -0.4883 30 1 4.7100 5.1544 -2.2130 31 1 2.3243 5.1796 -1.3501 32 1 2.9453 4.9773 0.3746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706765675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = -6.016813 kcal Electronic energy + Delta-G solvation = -14948.974779 eV Core-core repulsion = 12524.567851 eV Total energy + Delta-G solvation = -2424.406929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62253 -38.44689 -35.57669 -35.30364 -33.29272 -30.59411 -27.59206 -26.18339 -24.32135 -22.91114 -21.91697 -20.91059 -18.74112 -17.89590 -16.91664 -16.50622 -16.20846 -15.93106 -15.49685 -14.54167 -14.40929 -13.99657 -13.75521 -13.30740 -13.06361 -12.92904 -12.73752 -12.67680 -12.56165 -12.18373 -12.05996 -11.70744 -11.30550 -10.90953 -10.50913 -10.37671 -9.91574 -8.49602 -7.86328 -5.40036 1.43901 1.48426 1.57935 1.94293 2.42178 2.58330 3.18546 3.45100 3.55193 4.22004 4.28835 4.49266 4.55293 4.55535 4.67192 4.73970 4.78532 4.94541 4.95957 4.99800 5.10676 5.34144 5.42374 5.54445 5.64880 5.67833 5.77767 6.40814 6.74588 7.14007 7.52982 7.83950 8.32947 9.13084 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.013176 C = 0.010574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.295252 B = 2124.517246 C = 2647.350731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.733 5.733 3 C 0.485 3.515 4 O -0.569 6.569 5 C 0.174 3.826 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.550 5.550 9 C -0.264 4.264 10 H 0.050 0.950 11 C -0.028 4.028 12 N -0.907 5.907 13 Si 0.955 3.045 14 H -0.281 1.281 15 H -0.284 1.284 16 H -0.287 1.287 17 C 0.126 3.874 18 C -0.193 4.193 19 C -0.198 4.198 20 H 0.111 0.889 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.412 0.588 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 -4.672 -3.461 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.387 5.387 3 C 0.271 3.729 4 O -0.447 6.447 5 C 0.063 3.937 6 H 0.111 0.889 7 C -0.186 4.186 8 N -0.267 5.267 9 C -0.394 4.394 10 H 0.067 0.933 11 C -0.226 4.226 12 N -0.550 5.550 13 Si 0.783 3.217 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.214 1.214 17 C 0.018 3.982 18 C -0.232 4.232 19 C -0.239 4.239 20 H 0.129 0.871 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.247 0.753 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.853 -4.041 -3.423 8.660 hybrid contribution 0.612 -0.022 1.074 1.236 sum -6.240 -4.063 -2.349 7.808 Atomic orbital electron populations 1.21574 0.79436 1.03750 1.00752 1.45960 1.07997 1.08629 1.76110 1.22607 0.92437 0.83655 0.74233 1.90585 1.71056 1.32882 1.50213 1.20228 0.85919 0.86854 1.00655 0.88879 1.21876 1.02452 0.98757 0.95471 1.43185 1.52682 1.07697 1.23105 1.19136 1.12204 0.96908 1.11136 0.93268 1.25645 0.96472 0.98420 1.02060 1.70127 1.38372 1.10565 1.35980 0.85427 0.77751 0.77600 0.80896 1.20569 1.21022 1.21405 1.20935 1.00477 0.85137 0.91655 1.23197 0.94488 1.03730 1.01740 1.23047 0.94839 1.06464 0.99526 0.87055 0.94211 0.93486 0.75272 0.92125 0.91086 0.94495 0.93537 0.89079 0.90579 0.87753 0.89095 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.17 10.70 127.77 1.37 3.54 16 2 N -0.73 -22.26 5.61 -484.51 -2.72 -24.97 16 3 C 0.48 20.21 7.05 87.66 0.62 20.83 16 4 O -0.57 -27.65 14.89 -3.03 -0.05 -27.70 16 5 C 0.17 7.89 2.18 44.25 0.10 7.99 16 6 H 0.09 4.66 6.09 -2.39 -0.01 4.65 16 7 C -0.13 -4.97 8.96 71.98 0.65 -4.32 16 8 N -0.55 -28.09 2.50 -658.39 -1.65 -29.74 16 9 C -0.26 -14.61 8.27 84.03 0.69 -13.91 16 10 H 0.05 2.84 6.98 -2.91 -0.02 2.82 16 11 C -0.03 -1.52 4.84 84.86 0.41 -1.11 16 12 N -0.91 -48.74 10.45 21.65 0.23 -48.51 16 13 Si 0.95 44.09 29.59 68.60 2.03 46.12 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 C 0.13 5.85 4.75 44.99 0.21 6.06 16 18 C -0.19 -8.14 9.79 30.62 0.30 -7.84 16 19 C -0.20 -8.66 9.72 30.62 0.30 -8.37 16 20 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.41 10.04 8.25 -92.70 -0.76 9.28 16 24 H 0.06 2.74 7.25 -2.39 -0.02 2.72 16 25 H 0.07 2.21 7.56 -2.39 -0.02 2.20 16 26 H 0.04 1.38 6.98 -2.39 -0.02 1.37 16 27 H 0.26 13.16 8.32 -92.71 -0.77 12.39 16 28 H 0.09 4.00 7.04 -2.39 -0.02 3.98 16 29 H 0.08 3.53 6.84 -2.39 -0.02 3.51 16 30 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 32 H 0.06 2.81 8.06 -2.39 -0.02 2.79 16 Total: -1.00 -64.82 264.71 2.84 -61.98 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.35 Total: 19.95 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.64 Total: 2.87 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.14 Total: -103.22 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -64.82 2.84 -61.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706765675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds