Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99820 * 2 1 4 4 O 1.21276 * 120.00186 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99810 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47302 * 59.99693 * 5 3 2 7 7 C 1.52998 * 109.47119 * 299.99424 * 5 3 2 8 8 N 1.46500 * 109.47179 * 179.97438 * 5 3 2 9 9 C 1.36935 * 119.99952 * 239.99843 * 8 5 3 10 10 H 1.08000 * 120.00114 * 311.54496 * 9 8 5 11 11 C 1.38819 * 120.00056 * 131.54455 * 9 8 5 12 12 N 1.31614 * 120.00052 * 155.98741 * 11 9 8 13 13 Si 1.86802 * 119.99794 * 335.98299 * 11 9 8 14 14 H 1.48503 * 109.47080 * 95.13085 * 13 11 9 15 15 H 1.48503 * 109.47022 * 215.12927 * 13 11 9 16 16 H 1.48503 * 109.47115 * 335.13124 * 13 11 9 17 17 C 1.46498 * 120.00088 * 59.99775 * 8 5 3 18 18 C 1.52995 * 117.50094 * 182.18767 * 17 8 5 19 19 C 1.52996 * 117.50031 * 113.52484 * 17 8 5 20 20 H 1.09000 * 109.47578 * 60.00630 * 1 2 3 21 21 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47283 * 300.00298 * 1 2 3 23 23 H 0.96994 * 119.99704 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47473 * 300.00442 * 7 5 3 25 25 H 1.09006 * 109.47181 * 60.00047 * 7 5 3 26 26 H 1.09000 * 109.47363 * 180.02562 * 7 5 3 27 27 H 0.97000 * 119.99885 * 179.97438 * 12 11 9 28 28 H 1.09000 * 115.54927 * 327.85540 * 17 8 5 29 29 H 1.09005 * 117.50032 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.50388 * 145.01713 * 18 17 8 31 31 H 1.08998 * 117.49902 * 214.97693 * 19 17 8 32 32 H 1.08997 * 117.50006 * 0.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0088 0.6535 -0.8908 7 6 4.1563 0.4458 1.2483 8 7 4.1341 2.5484 -0.0011 9 6 4.9210 2.9961 -1.0285 10 1 5.7701 2.4123 -1.3523 11 6 4.6275 4.2001 -1.6539 12 7 5.5759 4.8661 -2.2776 13 14 2.8861 4.8749 -1.6103 14 1 2.7562 5.8372 -0.4867 15 1 2.5911 5.5665 -2.8909 16 1 1.9269 3.7576 -1.4186 17 6 3.7806 3.4508 1.0976 18 6 4.2788 4.8949 1.0138 19 6 4.9103 3.9239 2.0145 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.9499 -0.8400 0.0004 24 1 3.7933 0.9595 2.1385 25 1 3.7929 -0.5819 1.2484 26 1 5.2463 0.4462 1.2482 27 1 5.3707 5.7073 -2.7149 28 1 2.8034 3.2809 1.5495 29 1 4.8699 5.1737 0.1414 30 1 3.6295 5.6752 1.4108 31 1 4.6762 4.0658 3.0695 32 1 5.9166 3.5642 1.8001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706765677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = 25.347654 kcal Electronic energy + Delta-G solvation = -15108.437494 eV Core-core repulsion = 12685.390630 eV Total energy + Delta-G solvation = -2423.046863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22698 -36.96367 -34.05263 -33.39570 -32.10052 -29.22363 -26.47711 -24.17154 -22.76149 -21.46248 -20.35986 -19.24370 -16.88030 -16.38907 -15.72722 -14.91422 -14.72880 -14.25231 -13.64598 -13.11457 -12.90455 -12.67890 -12.26496 -12.12259 -11.83218 -11.59103 -11.44877 -10.63885 -10.56309 -10.43345 -10.16243 -9.64968 -9.44862 -9.03041 -8.77274 -8.58318 -8.19747 -6.53847 -6.01433 -3.57046 3.35255 3.57168 3.67329 3.75405 4.03188 4.70850 4.87925 5.00372 5.23822 5.40891 5.56984 5.68519 5.82656 5.87382 5.96030 6.09659 6.10627 6.26245 6.35249 6.48926 6.62899 6.72920 6.80150 6.85326 7.17472 7.47384 7.94628 8.09664 8.45063 8.87802 9.06050 9.69731 10.15153 11.08222 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.014089 C = 0.012251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.143152 B = 1986.893621 C = 2285.049607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.749 5.749 3 C 0.483 3.517 4 O -0.519 6.519 5 C 0.153 3.847 6 H 0.097 0.903 7 C -0.151 4.151 8 N -0.544 5.544 9 C -0.296 4.296 10 H 0.074 0.926 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.853 3.147 14 H -0.275 1.275 15 H -0.313 1.313 16 H -0.222 1.222 17 C 0.127 3.873 18 C -0.202 4.202 19 C -0.217 4.217 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.395 0.605 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -9.904 6.254 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.404 5.404 3 C 0.269 3.731 4 O -0.393 6.393 5 C 0.042 3.958 6 H 0.115 0.885 7 C -0.210 4.210 8 N -0.262 5.262 9 C -0.424 4.424 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.680 3.320 14 H -0.201 1.201 15 H -0.242 1.242 16 H -0.145 1.145 17 C 0.019 3.981 18 C -0.240 4.240 19 C -0.257 4.257 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.228 0.772 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.669 -8.968 6.113 12.739 hybrid contribution -0.771 0.216 -0.131 0.811 sum -7.440 -8.753 5.982 12.951 Atomic orbital electron populations 1.21384 0.81430 1.01001 1.01668 1.46202 1.06777 1.09260 1.78195 1.22767 0.92460 0.83053 0.74867 1.90703 1.70502 1.30991 1.47084 1.20745 0.87215 0.89293 0.98524 0.88541 1.22157 1.02234 0.98238 0.98412 1.43342 1.55822 1.06307 1.20684 1.18554 1.06136 1.06455 1.11254 0.90869 1.25718 0.97193 0.97077 0.93969 1.69957 1.32175 1.14595 1.36156 0.87342 0.88205 0.81071 0.75401 1.20089 1.24194 1.14473 1.21097 0.93910 0.91406 0.91680 1.23622 1.04517 0.92813 1.03047 1.23406 1.00584 1.07366 0.94386 0.92955 0.91617 0.93024 0.77189 0.92751 0.93416 0.91541 0.92606 0.88952 0.85747 0.91036 0.91298 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.70 59.85 0.64 1.76 16 2 N -0.75 -10.64 5.61 -67.08 -0.38 -11.01 16 3 C 0.48 9.32 6.99 -10.99 -0.08 9.25 16 4 O -0.52 -12.28 12.00 5.56 0.07 -12.22 16 5 C 0.15 2.98 3.13 -69.09 -0.22 2.76 16 6 H 0.10 1.83 7.89 -51.93 -0.41 1.42 16 7 C -0.15 -2.33 9.09 37.16 0.34 -2.00 16 8 N -0.54 -13.03 1.83 -159.46 -0.29 -13.33 16 9 C -0.30 -8.23 9.24 -15.06 -0.14 -8.37 16 10 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 11 C 0.06 1.86 3.32 -17.43 -0.06 1.80 16 12 N -0.89 -27.04 13.96 55.49 0.77 -26.27 16 13 Si 0.85 23.17 24.73 -169.99 -4.20 18.97 16 14 H -0.27 -7.35 5.72 56.52 0.32 -7.02 16 15 H -0.31 -8.72 7.11 56.52 0.40 -8.32 16 16 H -0.22 -6.20 4.69 56.52 0.27 -5.94 16 17 C 0.13 2.95 3.59 -67.94 -0.24 2.70 16 18 C -0.20 -4.87 6.63 -26.70 -0.18 -5.05 16 19 C -0.22 -4.63 10.38 -26.70 -0.28 -4.90 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.40 4.24 8.25 -40.82 -0.34 3.90 16 24 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 25 H 0.05 0.56 7.56 -51.93 -0.39 0.17 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.09 2.16 6.77 -51.93 -0.35 1.80 16 29 H 0.12 3.41 4.75 -51.93 -0.25 3.16 16 30 H 0.07 1.63 7.75 -51.93 -0.40 1.22 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -33.11 254.59 -5.25 -38.36 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.85 Total: 3.70 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.21 Total: -2.05 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.11 Total: -50.60 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.20 Total: 18.97 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.11 -5.25 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706765677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.706 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds