Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99820 * 2 1 4 4 O 1.21276 * 120.00186 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99810 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47302 * 59.99693 * 5 3 2 7 7 C 1.52998 * 109.47119 * 299.99424 * 5 3 2 8 8 N 1.46500 * 109.47179 * 179.97438 * 5 3 2 9 9 C 1.36935 * 119.99952 * 239.99843 * 8 5 3 10 10 H 1.08000 * 120.00114 * 311.54496 * 9 8 5 11 11 C 1.38819 * 120.00056 * 131.54455 * 9 8 5 12 12 N 1.31614 * 120.00052 * 155.98741 * 11 9 8 13 13 Si 1.86802 * 119.99794 * 335.98299 * 11 9 8 14 14 H 1.48503 * 109.47080 * 95.13085 * 13 11 9 15 15 H 1.48503 * 109.47022 * 215.12927 * 13 11 9 16 16 H 1.48503 * 109.47115 * 335.13124 * 13 11 9 17 17 C 1.46498 * 120.00088 * 59.99775 * 8 5 3 18 18 C 1.52995 * 117.50094 * 182.18767 * 17 8 5 19 19 C 1.52996 * 117.50031 * 113.52484 * 17 8 5 20 20 H 1.09000 * 109.47578 * 60.00630 * 1 2 3 21 21 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47283 * 300.00298 * 1 2 3 23 23 H 0.96994 * 119.99704 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47473 * 300.00442 * 7 5 3 25 25 H 1.09006 * 109.47181 * 60.00047 * 7 5 3 26 26 H 1.09000 * 109.47363 * 180.02562 * 7 5 3 27 27 H 0.97000 * 119.99885 * 179.97438 * 12 11 9 28 28 H 1.09000 * 115.54927 * 327.85540 * 17 8 5 29 29 H 1.09005 * 117.50032 * 359.97438 * 18 17 8 30 30 H 1.09000 * 117.50388 * 145.01713 * 18 17 8 31 31 H 1.08998 * 117.49902 * 214.97693 * 19 17 8 32 32 H 1.08997 * 117.50006 * 0.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0088 0.6535 -0.8908 7 6 4.1563 0.4458 1.2483 8 7 4.1341 2.5484 -0.0011 9 6 4.9210 2.9961 -1.0285 10 1 5.7701 2.4123 -1.3523 11 6 4.6275 4.2001 -1.6539 12 7 5.5759 4.8661 -2.2776 13 14 2.8861 4.8749 -1.6103 14 1 2.7562 5.8372 -0.4867 15 1 2.5911 5.5665 -2.8909 16 1 1.9269 3.7576 -1.4186 17 6 3.7806 3.4508 1.0976 18 6 4.2788 4.8949 1.0138 19 6 4.9103 3.9239 2.0145 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.9499 -0.8400 0.0004 24 1 3.7933 0.9595 2.1385 25 1 3.7929 -0.5819 1.2484 26 1 5.2463 0.4462 1.2482 27 1 5.3707 5.7073 -2.7149 28 1 2.8034 3.2809 1.5495 29 1 4.8699 5.1737 0.1414 30 1 3.6295 5.6752 1.4108 31 1 4.6762 4.0658 3.0695 32 1 5.9166 3.5642 1.8001 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706765677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = 0.570663 kcal Electronic energy + Delta-G solvation = -15109.511905 eV Core-core repulsion = 12685.390630 eV Total energy + Delta-G solvation = -2424.121274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76217 -38.74412 -35.43525 -35.05561 -34.19843 -30.96005 -27.64473 -26.10201 -24.28752 -23.26958 -22.09849 -20.83234 -18.89270 -17.88489 -17.34468 -16.69313 -16.34712 -15.83100 -15.26148 -15.03913 -14.55407 -14.25627 -13.99056 -13.56240 -13.21245 -13.02353 -12.93391 -12.65219 -12.34147 -12.20106 -12.12213 -11.61017 -11.36963 -10.84139 -10.45446 -10.37979 -9.90420 -8.47874 -8.24886 -5.75021 1.39957 1.46270 1.76957 1.94471 2.46372 2.52026 2.94261 3.17887 3.42561 4.11322 4.28417 4.34244 4.38259 4.46844 4.52385 4.64430 4.68931 4.88314 4.91255 4.97847 5.03332 5.13708 5.37428 5.45687 5.55913 5.64719 5.93546 6.22027 6.73343 7.05662 7.48731 7.63232 8.08482 8.88280 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030859 B = 0.014089 C = 0.012251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.143152 B = 1986.893621 C = 2285.049607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.728 5.728 3 C 0.483 3.517 4 O -0.568 6.568 5 C 0.145 3.855 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.558 5.558 9 C -0.278 4.278 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.931 5.931 13 Si 0.901 3.099 14 H -0.271 1.271 15 H -0.327 1.327 16 H -0.229 1.229 17 C 0.123 3.877 18 C -0.226 4.226 19 C -0.186 4.186 20 H 0.035 0.965 21 H 0.113 0.887 22 H 0.045 0.955 23 H 0.416 0.584 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.263 0.737 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -12.132 7.958 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.383 5.383 3 C 0.268 3.732 4 O -0.446 6.446 5 C 0.035 3.965 6 H 0.116 0.884 7 C -0.197 4.197 8 N -0.277 5.277 9 C -0.407 4.407 10 H 0.065 0.935 11 C -0.170 4.170 12 N -0.572 5.572 13 Si 0.729 3.271 14 H -0.197 1.197 15 H -0.257 1.257 16 H -0.151 1.151 17 C 0.016 3.984 18 C -0.264 4.264 19 C -0.226 4.226 20 H 0.053 0.947 21 H 0.132 0.868 22 H 0.064 0.936 23 H 0.252 0.748 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.848 -11.287 7.845 15.828 hybrid contribution -0.416 0.759 -0.614 1.061 sum -8.264 -10.528 7.231 15.213 Atomic orbital electron populations 1.21562 0.79713 1.03799 1.00558 1.45907 1.07849 1.08622 1.75879 1.22467 0.92299 0.83715 0.74677 1.90684 1.71190 1.32979 1.49783 1.20925 0.87873 0.86928 1.00782 0.88395 1.22036 1.01827 1.00098 0.95770 1.43393 1.56180 1.08045 1.20064 1.18436 1.05609 1.05684 1.11001 0.93476 1.26074 0.98732 0.97744 0.94470 1.70026 1.33326 1.15354 1.38506 0.86605 0.85762 0.80230 0.74494 1.19731 1.25736 1.15138 1.21130 0.94736 0.90511 0.92013 1.23524 1.05584 0.93924 1.03342 1.23388 0.99212 1.04284 0.95757 0.94665 0.86829 0.93619 0.74752 0.93086 0.88977 0.92069 0.92846 0.88530 0.89159 0.89988 0.87526 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.88 10.70 127.77 1.37 3.25 16 2 N -0.73 -18.01 5.61 -484.52 -2.72 -20.73 16 3 C 0.48 17.54 6.99 87.66 0.61 18.15 16 4 O -0.57 -26.19 12.00 -3.02 -0.04 -26.22 16 5 C 0.14 5.33 3.13 44.24 0.14 5.47 16 6 H 0.10 3.54 7.89 -2.38 -0.02 3.52 16 7 C -0.14 -3.79 9.09 71.98 0.65 -3.14 16 8 N -0.56 -26.32 1.83 -658.41 -1.20 -27.53 16 9 C -0.28 -15.64 9.24 84.04 0.78 -14.87 16 10 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 11 C 0.03 1.75 3.32 84.86 0.28 2.03 16 12 N -0.93 -58.22 13.96 21.65 0.30 -57.91 16 13 Si 0.90 49.21 24.73 68.60 1.70 50.91 16 14 H -0.27 -14.46 5.72 99.48 0.57 -13.89 16 15 H -0.33 -18.38 7.11 99.48 0.71 -17.67 16 16 H -0.23 -12.72 4.69 99.48 0.47 -12.26 16 17 C 0.12 5.57 3.59 44.99 0.16 5.74 16 18 C -0.23 -10.75 6.63 30.62 0.20 -10.54 16 19 C -0.19 -7.56 10.38 30.62 0.32 -7.24 16 20 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.42 6.92 8.25 -92.71 -0.76 6.16 16 24 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 25 H 0.09 1.70 7.56 -2.38 -0.02 1.68 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.10 4.33 6.77 -2.39 -0.02 4.32 16 29 H 0.09 5.02 4.75 -2.38 -0.01 5.01 16 30 H 0.08 3.66 7.75 -2.39 -0.02 3.64 16 31 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -73.51 254.59 2.52 -70.99 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -0.03 Total: 11.66 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.51 Total: -1.16 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -3.62 Total: -106.17 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.22 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.70 Total: 50.91 kcal Total: -73.51 2.52 -70.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706765677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.556 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds