Wall clock time and date at job start Mon Mar 30 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47375 * 2 1 4 4 C 1.50710 * 109.47156 * 119.99704 * 2 1 3 5 5 H 1.08000 * 119.99279 * 125.45874 * 4 2 1 6 6 C 1.37874 * 119.99868 * 305.46228 * 4 2 1 7 7 N 1.31509 * 119.99992 * 359.71861 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47061 * 59.99535 * 8 6 4 10 10 H 1.48501 * 109.47380 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46945 * 300.00092 * 8 6 4 12 12 C 1.53001 * 109.47221 * 239.99713 * 2 1 3 13 13 C 1.53002 * 109.47139 * 307.35815 * 12 2 1 14 14 C 1.53008 * 109.47001 * 293.71406 * 13 12 2 15 15 C 1.53002 * 109.47001 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46915 * 59.99705 * 15 14 13 17 17 C 1.52995 * 109.47526 * 299.99834 * 16 15 14 18 18 C 1.52993 * 109.47270 * 173.71486 * 13 12 2 19 19 H 1.08996 * 109.46900 * 307.68530 * 1 2 3 20 20 H 1.09000 * 109.46937 * 67.68904 * 1 2 3 21 21 H 1.09002 * 109.46711 * 187.69156 * 1 2 3 22 22 H 0.96699 * 114.00655 * 180.02562 * 3 2 1 23 23 H 0.97006 * 120.00118 * 179.97438 * 7 6 4 24 24 H 1.08998 * 109.47016 * 67.35783 * 12 2 1 25 25 H 1.09002 * 109.47044 * 187.35921 * 12 2 1 26 26 H 1.08995 * 109.47170 * 53.71052 * 13 12 2 27 27 H 1.08995 * 109.46869 * 299.99830 * 14 13 12 28 28 H 1.08996 * 109.47001 * 59.99778 * 14 13 12 29 29 H 1.09002 * 109.47066 * 299.99996 * 15 14 13 30 30 H 1.08999 * 109.46814 * 180.02562 * 15 14 13 31 31 H 1.09004 * 109.46848 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47016 * 60.00261 * 16 15 14 33 33 H 1.09002 * 109.47321 * 300.00240 * 17 16 15 34 34 H 1.09001 * 109.47678 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47220 * 299.99773 * 18 13 12 36 36 H 1.08995 * 109.47378 * 59.99693 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 1.2306 5 1 2.7239 -1.5343 1.1338 6 6 1.6090 -0.3085 2.4796 7 7 0.7712 0.6983 2.5976 8 14 2.2312 -1.1894 4.0049 9 1 3.7103 -1.0758 4.0735 10 1 1.6309 -0.5701 5.2138 11 1 1.8474 -2.6226 3.9399 12 6 2.0400 -0.7213 -1.2492 13 6 1.3848 -2.1006 -1.3450 14 6 1.8632 -2.9742 -0.1835 15 6 1.2085 -4.3537 -0.2796 16 6 1.5963 -5.0110 -1.6056 17 6 1.1179 -4.1375 -2.7670 18 6 1.7721 -2.7583 -2.6709 19 1 -0.3633 0.6282 0.8133 20 1 -0.3633 0.3901 -0.9507 21 1 -0.3633 -1.0185 0.1375 22 1 2.9704 1.4236 -0.0004 23 1 0.4730 0.9808 3.4764 24 1 1.7881 -0.1372 -2.1343 25 1 3.1221 -0.8367 -1.1858 26 1 0.3014 -1.9924 -1.2958 27 1 2.9466 -3.0825 -0.2326 28 1 1.5873 -2.5057 0.7612 29 1 0.1249 -4.2458 -0.2308 30 1 1.5489 -4.9759 0.5481 31 1 1.1302 -5.9940 -1.6739 32 1 2.6798 -5.1189 -1.6544 33 1 0.0343 -4.0296 -2.7182 34 1 1.3938 -4.6059 -3.7118 35 1 1.4313 -2.1360 -3.4984 36 1 2.8555 -2.8665 -2.7200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709743664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:05 Heat of formation + Delta-G solvation = -91.357543 kcal Electronic energy + Delta-G solvation = -15402.043125 eV Core-core repulsion = 13077.475888 eV Total energy + Delta-G solvation = -2324.567237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.10826 -37.75820 -34.34299 -33.61030 -31.57170 -30.16832 -27.41406 -26.86659 -23.26133 -22.66291 -20.87042 -20.25608 -18.89411 -16.77171 -16.51269 -16.10364 -15.40266 -14.93311 -14.88935 -14.41969 -14.28121 -13.71963 -13.25951 -13.04113 -12.95190 -12.66234 -12.61206 -12.39421 -12.32153 -12.13923 -11.85814 -11.72802 -11.59512 -11.11494 -11.03028 -10.66662 -10.51960 -10.06001 -9.93344 -7.94337 -6.13682 1.43792 1.45058 1.51052 2.45637 3.22904 3.90047 3.98781 4.08814 4.30214 4.39532 4.47260 4.68499 4.73349 4.77810 4.83403 4.90950 4.94487 4.97656 5.13577 5.18093 5.20900 5.29834 5.35377 5.42190 5.46003 5.51151 5.62835 5.69751 5.79876 5.83566 6.04379 6.19875 6.37564 6.89694 7.47138 7.69279 9.02833 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.012005 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.033820 B = 2331.770928 C = 2934.385632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.232 3.768 3 O -0.591 6.591 4 C -0.551 4.551 5 H 0.079 0.921 6 C 0.029 3.971 7 N -0.895 5.895 8 Si 0.938 3.062 9 H -0.273 1.273 10 H -0.293 1.293 11 H -0.267 1.267 12 C -0.121 4.121 13 C -0.066 4.066 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.112 4.112 19 H 0.059 0.941 20 H 0.016 0.984 21 H 0.046 0.954 22 H 0.356 0.644 23 H 0.254 0.746 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -9.451 -7.516 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.194 3.806 3 O -0.396 6.396 4 C -0.589 4.589 5 H 0.096 0.904 6 C -0.172 4.172 7 N -0.533 5.533 8 Si 0.764 3.236 9 H -0.199 1.199 10 H -0.219 1.219 11 H -0.192 1.192 12 C -0.158 4.158 13 C -0.085 4.085 14 C -0.177 4.177 15 C -0.158 4.158 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.150 4.150 19 H 0.078 0.922 20 H 0.035 0.965 21 H 0.065 0.935 22 H 0.201 0.799 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.036 -9.223 -7.397 11.868 hybrid contribution 0.781 -0.121 1.093 1.349 sum 1.818 -9.344 -6.304 11.417 Atomic orbital electron populations 1.21566 0.96799 1.00079 0.98745 1.18931 0.91401 0.78980 0.91287 1.86465 1.24596 1.31196 1.97349 1.22170 1.27789 1.17255 0.91636 0.90359 1.25704 0.94889 0.95068 1.01545 1.70140 1.32917 1.27025 1.23238 0.85946 0.78703 0.79332 0.79616 1.19872 1.21879 1.19179 1.22143 0.99340 0.96633 0.97728 1.20897 0.99141 0.93479 0.94967 1.22368 0.98661 0.94844 1.01778 1.21590 1.00042 0.96536 0.97640 1.21520 1.00909 0.98448 0.94248 1.21491 1.00099 0.95006 0.98524 1.21593 1.00341 0.96512 0.96509 0.92212 0.96499 0.93485 0.79902 0.93657 0.93971 0.93458 0.92720 0.93886 0.88600 0.93037 0.92633 0.91188 0.92224 0.92454 0.90727 0.92287 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 7.56 71.98 0.54 -5.17 16 2 C 0.23 11.35 0.78 -11.54 -0.01 11.34 16 3 O -0.59 -30.59 12.67 -148.98 -1.89 -32.48 16 4 C -0.55 -28.17 5.59 25.60 0.14 -28.03 16 5 H 0.08 3.85 5.26 -2.91 -0.02 3.84 16 6 C 0.03 1.57 5.25 84.65 0.44 2.02 16 7 N -0.89 -51.57 10.81 21.45 0.23 -51.34 16 8 Si 0.94 42.42 29.54 68.60 2.03 44.44 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C -0.12 -4.88 4.26 30.60 0.13 -4.75 16 13 C -0.07 -2.37 1.83 -10.79 -0.02 -2.39 16 14 C -0.14 -5.13 3.74 30.60 0.11 -5.01 16 15 C -0.12 -3.67 5.92 30.59 0.18 -3.49 16 16 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 17 C -0.11 -2.77 5.92 30.58 0.18 -2.59 16 18 C -0.11 -3.20 5.20 30.58 0.16 -3.04 16 19 H 0.06 3.37 5.98 -2.39 -0.01 3.35 16 20 H 0.02 0.75 8.13 -2.39 -0.02 0.73 16 21 H 0.05 2.24 6.66 -2.39 -0.02 2.23 16 22 H 0.36 16.17 9.04 -74.06 -0.67 15.50 16 23 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 26 H 0.05 2.09 6.13 -2.39 -0.01 2.07 16 27 H 0.04 1.56 7.96 -2.39 -0.02 1.54 16 28 H 0.10 4.23 4.37 -2.39 -0.01 4.22 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -58.42 269.56 2.80 -55.62 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.38 Total: 27.50 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 2.05 Total: -43.75 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.23 Total: -51.34 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.89 Total: -32.48 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -58.42 2.80 -55.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709743664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.735 kcal (2) G-P(sol) polarization free energy of solvation -58.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds