Wall clock time and date at job start Mon Mar 30 2020 02:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46906 * 109.46942 * 2 1 4 4 C 1.47472 * 111.00187 * 91.52741 * 3 2 1 5 5 C 1.53512 * 87.93533 * 138.70221 * 4 3 2 6 6 C 1.47475 * 110.99695 * 187.50222 * 3 2 1 7 7 H 1.09003 * 113.47854 * 336.05764 * 6 3 2 8 8 C 1.53003 * 113.47810 * 106.53223 * 6 3 2 9 9 N 1.46500 * 109.46971 * 304.99307 * 8 6 3 10 10 C 1.34769 * 120.00268 * 180.02562 * 9 8 6 11 11 O 1.21690 * 120.00066 * 359.97438 * 10 9 8 12 12 C 1.46378 * 120.00476 * 180.02562 * 10 9 8 13 13 H 1.08003 * 119.99343 * 0.02562 * 12 10 9 14 14 C 1.40047 * 120.00401 * 180.02562 * 12 10 9 15 15 N 1.30674 * 119.99750 * 359.97438 * 14 12 10 16 16 Si 1.86792 * 120.00108 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47508 * 59.99883 * 16 14 12 18 18 H 1.48505 * 109.47330 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47288 * 299.99732 * 16 14 12 20 20 H 1.09004 * 109.46639 * 300.00089 * 1 2 3 21 21 H 1.08991 * 109.47108 * 59.99747 * 1 2 3 22 22 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46891 * 240.00361 * 2 1 3 24 24 H 1.08997 * 109.47208 * 119.99525 * 2 1 3 25 25 H 1.08998 * 113.48140 * 253.47102 * 4 3 2 26 26 H 1.09007 * 113.47537 * 23.93571 * 4 3 2 27 27 H 1.08998 * 114.17034 * 87.62025 * 5 4 3 28 28 H 1.08995 * 114.17400 * 220.14249 * 5 4 3 29 29 H 1.08997 * 109.47214 * 64.99970 * 8 6 3 30 30 H 1.09000 * 109.47021 * 184.99969 * 8 6 3 31 31 H 0.97002 * 120.00019 * 0.02562 * 9 8 6 32 32 H 0.97003 * 119.99814 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.2304 1.8711 1.3763 5 6 3.5250 2.5337 0.8847 6 6 3.4828 1.4283 -0.1798 7 1 3.9853 0.5109 0.1268 8 6 3.9124 1.9035 -1.5692 9 7 3.2755 1.0674 -2.5898 10 6 3.5100 1.3025 -3.8960 11 8 4.2503 2.2095 -4.2277 12 6 2.8732 0.4675 -4.9158 13 1 2.2151 -0.3367 -4.6214 14 6 3.1172 0.7114 -6.2731 15 7 3.9130 1.6847 -6.6292 16 14 2.3040 -0.3537 -7.5744 17 1 0.8280 -0.2466 -7.4504 18 1 2.7226 0.1061 -8.9230 19 1 2.7153 -1.7680 -7.3845 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.4752 2.5849 1.7052 26 1 2.3987 1.0718 2.0981 27 1 3.3888 3.5400 0.4887 28 1 4.3593 2.4547 1.5816 29 1 3.6091 2.9411 -1.7082 30 1 4.9959 1.8263 -1.6607 31 1 2.6851 0.3447 -2.3254 32 1 4.0818 1.8539 -7.5693 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712268912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:47 Heat of formation + Delta-G solvation = -36.789293 kcal Electronic energy + Delta-G solvation = -14251.354041 eV Core-core repulsion = 11825.612718 eV Total energy + Delta-G solvation = -2425.741324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30226 -39.12018 -35.13236 -34.36406 -33.68516 -29.83022 -28.20775 -27.69142 -24.09368 -22.87699 -21.66395 -20.72342 -19.23305 -17.50274 -17.19711 -16.53827 -16.26419 -15.68599 -15.38098 -15.04124 -14.44265 -14.23920 -13.79940 -13.24524 -13.21392 -13.02157 -12.84400 -12.65558 -12.59794 -12.18439 -12.08637 -11.82908 -11.59036 -11.35641 -10.92295 -9.90723 -9.75274 -9.43400 -8.29048 -6.86132 1.38696 1.43011 1.54619 2.24576 2.47198 2.86612 3.25857 3.55992 3.62934 3.88955 4.05760 4.20933 4.26219 4.39850 4.45811 4.61987 4.69814 4.79872 4.91117 4.92780 4.99252 5.10999 5.21552 5.30241 5.36132 5.48908 5.87229 6.20493 6.24177 6.30707 6.85789 7.55762 8.49610 8.67658 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040066 B = 0.007748 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.670458 B = 3613.108098 C = 4201.507048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 N -0.490 5.490 4 C 0.006 3.994 5 C -0.129 4.129 6 C 0.021 3.979 7 H 0.093 0.907 8 C 0.151 3.849 9 N -0.748 5.748 10 C 0.535 3.465 11 O -0.635 6.635 12 C -0.575 4.575 13 H 0.084 0.916 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 0.999 3.001 17 H -0.255 1.255 18 H -0.272 1.272 19 H -0.253 1.253 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.390 0.610 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 -5.041 14.887 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 N -0.213 5.213 4 C -0.122 4.122 5 C -0.167 4.167 6 C -0.089 4.089 7 H 0.111 0.889 8 C 0.026 3.974 9 N -0.403 5.403 10 C 0.339 3.661 11 O -0.523 6.523 12 C -0.612 4.612 13 H 0.102 0.898 14 C -0.187 4.187 15 N -0.453 5.453 16 Si 0.818 3.182 17 H -0.179 1.179 18 H -0.197 1.197 19 H -0.177 1.177 20 H 0.080 0.920 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.224 0.776 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.108 -3.957 14.081 15.492 hybrid contribution 0.139 -0.938 -0.217 0.973 sum -4.970 -4.895 13.864 15.520 Atomic orbital electron populations 1.21610 0.93922 1.02079 1.01821 1.22745 0.97706 0.90068 1.01193 1.68950 1.12560 1.20149 1.19649 1.23831 0.97555 1.00090 0.90727 1.23164 0.99006 0.97753 0.96771 1.23639 0.90894 1.00323 0.94058 0.88872 1.20924 0.95509 0.93922 0.87077 1.45740 1.52382 1.36936 1.05232 1.18644 0.81129 0.84132 0.82155 1.90536 1.43215 1.36574 1.81990 1.21388 1.30794 1.17746 0.91280 0.89792 1.27009 0.93929 0.95859 1.01944 1.70193 1.29633 1.27184 1.18243 0.85057 0.79137 0.78495 0.75489 1.17901 1.19671 1.17664 0.92048 0.93908 0.90932 0.92404 0.91871 0.89208 0.89291 0.89776 0.87976 0.95289 0.94565 0.77562 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.23 71.98 0.74 -2.29 16 2 C 0.01 0.28 5.27 86.30 0.46 0.73 16 3 N -0.49 -13.57 5.90 -902.16 -5.32 -18.89 16 4 C 0.01 0.12 7.70 83.57 0.64 0.77 16 5 C -0.13 -2.83 8.00 30.94 0.25 -2.59 16 6 C 0.02 0.59 3.25 42.19 0.14 0.73 16 7 H 0.09 2.37 7.91 -2.39 -0.02 2.35 16 8 C 0.15 6.27 5.81 86.38 0.50 6.78 16 9 N -0.75 -36.32 5.46 -467.41 -2.55 -38.87 16 10 C 0.54 32.93 7.75 86.36 0.67 33.60 16 11 O -0.64 -44.78 15.02 -4.32 -0.06 -44.85 16 12 C -0.58 -34.17 9.54 24.83 0.24 -33.94 16 13 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 14 C 0.03 1.59 5.50 85.30 0.47 2.05 16 15 N -0.82 -52.12 11.83 21.84 0.26 -51.86 16 16 Si 1.00 42.15 29.56 68.60 2.03 44.17 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 20 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.59 6.25 -2.39 -0.01 1.58 16 24 H 0.06 1.22 7.35 -2.39 -0.02 1.20 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.37 7.45 -2.38 -0.02 1.35 16 27 H 0.08 2.06 7.94 -2.39 -0.02 2.04 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.33 7.87 -2.39 -0.02 1.31 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.39 16.81 6.18 -92.71 -0.57 16.24 16 32 H 0.27 15.72 8.29 -92.71 -0.77 14.95 16 Total: -1.00 -78.38 268.07 -1.02 -79.41 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.53 Total: 25.04 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.10 Total: 5.85 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -7.62 Total: -109.62 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.06 Total: -44.85 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -78.38 -1.02 -79.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712268912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.617 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds