Wall clock time and date at job start Mon Mar 30 2020 02:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99928 * 2 1 4 4 C 1.50698 * 109.46869 * 66.04763 * 3 2 1 5 5 N 1.27952 * 119.99849 * 125.00552 * 4 3 2 6 6 O 1.41603 * 119.99795 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99869 * 236.04528 * 2 1 3 8 8 C 1.53004 * 109.47169 * 287.43446 * 7 2 1 9 9 C 1.50697 * 115.55080 * 305.54533 * 8 7 2 10 10 H 1.08007 * 119.99679 * 144.40267 * 9 8 7 11 11 C 1.37876 * 120.00243 * 324.41706 * 9 8 7 12 12 N 1.31517 * 119.99880 * 347.85985 * 11 9 8 13 13 Si 1.86797 * 120.00073 * 167.86708 * 11 9 8 14 14 H 1.48496 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47199 * 119.99621 * 13 11 9 16 16 H 1.48494 * 109.47158 * 239.99288 * 13 11 9 17 17 C 1.52998 * 117.49474 * 159.87928 * 8 7 2 18 18 C 1.52995 * 117.49787 * 91.22051 * 8 7 2 19 19 H 1.09000 * 109.47664 * 65.81149 * 1 2 3 20 20 H 1.09007 * 109.46806 * 185.80798 * 1 2 3 21 21 H 1.08997 * 109.47204 * 305.80388 * 1 2 3 22 22 H 1.09005 * 109.46853 * 306.04303 * 3 2 1 23 23 H 1.08999 * 109.47106 * 186.04741 * 3 2 1 24 24 H 1.07999 * 119.99912 * 304.71757 * 4 3 2 25 25 H 0.96699 * 113.99598 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.47336 * 47.43677 * 7 2 1 27 27 H 1.09005 * 109.47168 * 167.43445 * 7 2 1 28 28 H 0.96996 * 119.99886 * 185.03606 * 12 11 9 29 29 H 1.08993 * 117.50564 * 359.97438 * 17 8 7 30 30 H 1.09001 * 117.49899 * 145.02614 * 17 8 7 31 31 H 1.08998 * 117.50335 * 214.98195 * 18 8 7 32 32 H 1.09009 * 117.50033 * 359.97072 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 7 2.5542 2.5653 2.0245 6 8 2.2172 3.2007 3.2444 7 6 1.9954 -0.7660 -1.1376 8 6 1.7747 -2.2600 -0.8923 9 6 2.3255 -2.7941 0.4047 10 1 1.7954 -3.5695 0.9379 11 6 3.5059 -2.2927 0.9109 12 7 4.2719 -1.5308 0.1610 13 14 4.0173 -2.6958 2.6617 14 1 2.9897 -3.5644 3.2900 15 1 5.3223 -3.4044 2.6456 16 1 4.1462 -1.4387 3.4416 17 6 1.8063 -3.1877 -2.1085 18 6 0.4767 -2.8777 -1.4163 19 1 -0.3634 0.4211 -0.9374 20 1 -0.3633 -1.0225 0.1040 21 1 -0.3633 0.6012 0.8334 22 1 1.5611 1.9274 -0.8310 23 1 3.0797 1.3445 -0.1083 24 1 0.6052 2.0979 1.6139 25 1 2.9763 3.5611 3.7228 26 1 1.4766 -0.4668 -2.0484 27 1 3.0621 -0.5692 -1.2457 28 1 5.1360 -1.2381 0.4904 29 1 1.9839 -2.7338 -3.0834 30 1 2.2250 -4.1846 -1.9704 31 1 0.0212 -3.6706 -0.8231 32 1 -0.2203 -2.2196 -1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714618706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:33 Heat of formation + Delta-G solvation = 48.682758 kcal Electronic energy + Delta-G solvation = -14538.036099 eV Core-core repulsion = 12116.001121 eV Total energy + Delta-G solvation = -2422.034977 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.80845 -36.64215 -35.12632 -32.43299 -31.96249 -26.96288 -26.72899 -25.25251 -22.11061 -21.11043 -19.49783 -18.84215 -17.65251 -16.08882 -15.21234 -14.82441 -14.43000 -14.08680 -13.96069 -13.19037 -13.12637 -12.64827 -12.21562 -11.48478 -11.31867 -11.08536 -10.92729 -10.84981 -10.45678 -10.38934 -9.97797 -9.57573 -9.54704 -9.21759 -8.97344 -8.58551 -7.92401 -7.29272 -5.88027 -3.86945 2.40141 3.35449 3.38543 3.48989 3.50851 4.52753 4.86555 5.21463 5.23843 5.66770 5.72125 5.77238 6.02318 6.08707 6.19137 6.35755 6.40764 6.58517 6.61920 6.71899 6.77437 6.96922 6.99414 7.17122 7.37731 7.57149 8.00857 8.03585 8.08903 8.15371 8.59232 9.05730 9.72773 11.15935 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.013242 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.653308 B = 2114.003482 C = 2964.369035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.500 5.500 3 C 0.104 3.896 4 C 0.130 3.870 5 N -0.334 5.334 6 O -0.430 6.430 7 C 0.104 3.896 8 C 0.068 3.932 9 C -0.474 4.474 10 H 0.054 0.946 11 C 0.091 3.909 12 N -0.877 5.877 13 Si 0.887 3.113 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.284 1.284 17 C -0.206 4.206 18 C -0.218 4.218 19 H 0.010 0.990 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.399 0.601 26 H -0.007 1.007 27 H 0.117 0.883 28 H 0.257 0.743 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 6.139 -0.550 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.224 5.224 3 C -0.025 4.025 4 C -0.085 4.085 5 N -0.078 5.078 6 O -0.335 6.335 7 C -0.023 4.023 8 C 0.068 3.932 9 C -0.511 4.511 10 H 0.072 0.928 11 C -0.112 4.112 12 N -0.515 5.515 13 Si 0.716 3.284 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.210 1.210 17 C -0.245 4.245 18 C -0.256 4.256 19 H 0.028 0.972 20 H 0.096 0.904 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.123 0.877 25 H 0.246 0.754 26 H 0.011 0.989 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.506 6.098 -0.117 7.035 hybrid contribution -0.465 0.295 0.657 0.857 sum -3.971 6.394 0.539 7.546 Atomic orbital electron populations 1.22492 0.89192 1.02689 0.98129 1.61585 1.05801 1.08918 1.46089 1.20865 1.02609 0.89670 0.89377 1.26103 0.96628 0.91018 0.94760 1.76102 1.28229 1.09058 0.94382 1.88421 1.37330 1.75684 1.32034 1.21792 1.02119 0.92591 0.85795 1.18901 0.92219 0.89476 0.92646 1.20298 1.06952 1.19920 1.03926 0.92794 1.24696 0.96150 0.93862 0.96512 1.69760 1.09827 1.35847 1.36045 0.86633 0.77847 0.77903 0.86007 1.20085 1.21591 1.20966 1.22973 1.01211 1.02479 0.97817 1.22955 0.91474 1.04682 1.06446 0.97154 0.90397 0.93099 0.93540 0.88385 0.87701 0.75430 0.98935 0.86522 0.93259 0.92001 0.90459 0.90904 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.11 60.06 0.55 0.97 16 2 N -0.50 -10.37 4.31 -244.36 -1.05 -11.42 16 3 C 0.10 1.89 5.52 -4.97 -0.03 1.86 16 4 C 0.13 2.31 10.22 -13.90 -0.14 2.17 16 5 N -0.33 -6.27 12.02 32.65 0.39 -5.88 16 6 O -0.43 -7.08 14.94 -11.47 -0.17 -7.26 16 7 C 0.10 2.32 4.10 -3.82 -0.02 2.30 16 8 C 0.07 1.64 1.58 -155.66 -0.25 1.40 16 9 C -0.47 -12.76 8.72 -34.44 -0.30 -13.06 16 10 H 0.05 1.49 7.84 -52.48 -0.41 1.08 16 11 C 0.09 2.45 5.16 -17.82 -0.09 2.36 16 12 N -0.88 -23.75 10.83 55.43 0.60 -23.15 16 13 Si 0.89 21.77 29.56 -169.99 -5.02 16.75 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 17 C -0.21 -4.61 9.96 -26.70 -0.27 -4.88 16 18 C -0.22 -4.64 8.50 -26.70 -0.23 -4.87 16 19 H 0.01 0.16 8.07 -51.93 -0.42 -0.26 16 20 H 0.08 1.48 6.49 -51.93 -0.34 1.15 16 21 H 0.05 0.81 6.44 -51.93 -0.33 0.47 16 22 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 23 H 0.10 1.96 7.82 -51.93 -0.41 1.55 16 24 H 0.11 1.71 6.85 -52.49 -0.36 1.35 16 25 H 0.40 4.55 9.28 45.56 0.42 4.97 16 26 H -0.01 -0.15 7.94 -51.93 -0.41 -0.57 16 27 H 0.12 2.88 5.68 -51.93 -0.30 2.58 16 28 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 271.29 15.07 4.09 4.09 Total: -1.00 -29.38 271.29 -5.74 -35.12 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.80 Total: 3.50 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.77 Total: -11.75 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.06 Total: -40.45 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.17 Total: -7.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.38 -5.74 -35.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714618706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.800 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds