Wall clock time and date at job start Mon Mar 30 2020 02:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99928 * 2 1 4 4 C 1.50698 * 109.46869 * 66.04763 * 3 2 1 5 5 N 1.27952 * 119.99849 * 125.00552 * 4 3 2 6 6 O 1.41603 * 119.99795 * 179.97438 * 5 4 3 7 7 C 1.46900 * 110.99869 * 236.04528 * 2 1 3 8 8 C 1.53004 * 109.47169 * 287.43446 * 7 2 1 9 9 C 1.50697 * 115.55080 * 305.54533 * 8 7 2 10 10 H 1.08007 * 119.99679 * 144.40267 * 9 8 7 11 11 C 1.37876 * 120.00243 * 324.41706 * 9 8 7 12 12 N 1.31517 * 119.99880 * 347.85985 * 11 9 8 13 13 Si 1.86797 * 120.00073 * 167.86708 * 11 9 8 14 14 H 1.48496 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47199 * 119.99621 * 13 11 9 16 16 H 1.48494 * 109.47158 * 239.99288 * 13 11 9 17 17 C 1.52998 * 117.49474 * 159.87928 * 8 7 2 18 18 C 1.52995 * 117.49787 * 91.22051 * 8 7 2 19 19 H 1.09000 * 109.47664 * 65.81149 * 1 2 3 20 20 H 1.09007 * 109.46806 * 185.80798 * 1 2 3 21 21 H 1.08997 * 109.47204 * 305.80388 * 1 2 3 22 22 H 1.09005 * 109.46853 * 306.04303 * 3 2 1 23 23 H 1.08999 * 109.47106 * 186.04741 * 3 2 1 24 24 H 1.07999 * 119.99912 * 304.71757 * 4 3 2 25 25 H 0.96699 * 113.99598 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.47336 * 47.43677 * 7 2 1 27 27 H 1.09005 * 109.47168 * 167.43445 * 7 2 1 28 28 H 0.96996 * 119.99886 * 185.03606 * 12 11 9 29 29 H 1.08993 * 117.50564 * 359.97438 * 17 8 7 30 30 H 1.09001 * 117.49899 * 145.02614 * 17 8 7 31 31 H 1.08998 * 117.50335 * 214.98195 * 18 8 7 32 32 H 1.09009 * 117.50033 * 359.97072 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 7 2.5542 2.5653 2.0245 6 8 2.2172 3.2007 3.2444 7 6 1.9954 -0.7660 -1.1376 8 6 1.7747 -2.2600 -0.8923 9 6 2.3255 -2.7941 0.4047 10 1 1.7954 -3.5695 0.9379 11 6 3.5059 -2.2927 0.9109 12 7 4.2719 -1.5308 0.1610 13 14 4.0173 -2.6958 2.6617 14 1 2.9897 -3.5644 3.2900 15 1 5.3223 -3.4044 2.6456 16 1 4.1462 -1.4387 3.4416 17 6 1.8063 -3.1877 -2.1085 18 6 0.4767 -2.8777 -1.4163 19 1 -0.3634 0.4211 -0.9374 20 1 -0.3633 -1.0225 0.1040 21 1 -0.3633 0.6012 0.8334 22 1 1.5611 1.9274 -0.8310 23 1 3.0797 1.3445 -0.1083 24 1 0.6052 2.0979 1.6139 25 1 2.9763 3.5611 3.7228 26 1 1.4766 -0.4668 -2.0484 27 1 3.0621 -0.5692 -1.2457 28 1 5.1360 -1.2381 0.4904 29 1 1.9839 -2.7338 -3.0834 30 1 2.2250 -4.1846 -1.9704 31 1 0.0212 -3.6706 -0.8231 32 1 -0.2203 -2.2196 -1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714618706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:33 Heat of formation + Delta-G solvation = 27.955801 kcal Electronic energy + Delta-G solvation = -14538.934887 eV Core-core repulsion = 12116.001121 eV Total energy + Delta-G solvation = -2422.933766 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40852 -38.07882 -36.68012 -33.98614 -33.82442 -28.46771 -28.25476 -27.24311 -23.65661 -22.83932 -20.90041 -20.70336 -18.99994 -17.97912 -16.65157 -16.58335 -16.06998 -15.68012 -15.63968 -14.78847 -14.54544 -14.33689 -13.58445 -13.32943 -13.02184 -12.84380 -12.65695 -12.44032 -12.32655 -12.14435 -11.82615 -11.17390 -10.95659 -10.89605 -10.79872 -10.39833 -9.82867 -8.78925 -7.90731 -5.93847 1.03501 1.40596 1.48127 1.53350 2.10746 2.51403 3.16474 3.49255 3.83490 3.88000 4.31933 4.37789 4.49328 4.60582 4.72120 4.80841 4.84461 4.95524 5.01831 5.05069 5.21666 5.25778 5.46332 5.62757 5.71550 5.81594 6.09676 6.47020 6.51883 6.69933 6.83856 7.03588 7.66204 9.09938 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.013242 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.653308 B = 2114.003482 C = 2964.369035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.111 3.889 4 C 0.130 3.870 5 N -0.361 5.361 6 O -0.430 6.430 7 C 0.116 3.884 8 C 0.038 3.962 9 C -0.487 4.487 10 H 0.037 0.963 11 C 0.059 3.941 12 N -0.888 5.888 13 Si 0.929 3.071 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.293 1.293 17 C -0.208 4.208 18 C -0.193 4.193 19 H 0.032 0.968 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.417 0.583 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 6.815 -0.745 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.251 5.251 3 C -0.018 4.018 4 C -0.085 4.085 5 N -0.104 5.104 6 O -0.340 6.340 7 C -0.011 4.011 8 C 0.037 3.963 9 C -0.525 4.525 10 H 0.055 0.945 11 C -0.143 4.143 12 N -0.526 5.526 13 Si 0.758 3.242 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.220 1.220 17 C -0.247 4.247 18 C -0.230 4.230 19 H 0.050 0.950 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.141 0.859 25 H 0.268 0.732 26 H 0.027 0.973 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.638 6.770 -0.314 8.212 hybrid contribution -0.123 0.092 0.748 0.764 sum -4.761 6.863 0.434 8.364 Atomic orbital electron populations 1.22474 0.87344 1.02303 1.00038 1.61443 1.07644 1.10223 1.45829 1.20764 1.01173 0.89062 0.90825 1.26148 0.97325 0.90622 0.94366 1.76007 1.29233 1.09745 0.95447 1.88384 1.38834 1.75542 1.31199 1.21484 1.00730 0.91813 0.87089 1.19007 0.94500 0.90732 0.92027 1.20462 1.06982 1.19702 1.05337 0.94484 1.25113 0.96429 0.94251 0.98465 1.69871 1.09773 1.36371 1.36584 0.85979 0.77640 0.77120 0.83470 1.20142 1.21116 1.21964 1.22965 1.02097 1.01592 0.98000 1.22918 0.90893 1.04066 1.05130 0.94969 0.91942 0.91325 0.90542 0.90932 0.85948 0.73215 0.97318 0.89348 0.93584 0.90423 0.91624 0.91188 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.11 127.69 1.16 2.03 16 2 N -0.53 -21.01 4.31 -927.02 -4.00 -25.00 16 3 C 0.11 3.85 5.52 85.56 0.47 4.32 16 4 C 0.13 4.39 10.22 88.67 0.91 5.30 16 5 N -0.36 -13.09 12.02 -50.50 -0.61 -13.70 16 6 O -0.43 -13.40 14.94 -38.79 -0.58 -13.98 16 7 C 0.12 5.04 4.10 86.30 0.35 5.40 16 8 C 0.04 1.79 1.58 -52.93 -0.08 1.71 16 9 C -0.49 -26.23 8.72 25.60 0.22 -26.00 16 10 H 0.04 2.06 7.84 -2.91 -0.02 2.03 16 11 C 0.06 3.17 5.16 84.65 0.44 3.61 16 12 N -0.89 -48.36 10.83 21.45 0.23 -48.13 16 13 Si 0.93 44.82 29.56 68.60 2.03 46.85 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 17 C -0.21 -9.02 9.96 30.62 0.30 -8.71 16 18 C -0.19 -7.79 8.50 30.62 0.26 -7.53 16 19 H 0.03 0.91 8.07 -2.39 -0.02 0.89 16 20 H 0.06 2.23 6.49 -2.38 -0.02 2.21 16 21 H 0.07 1.97 6.44 -2.39 -0.02 1.96 16 22 H 0.08 2.19 8.12 -2.38 -0.02 2.17 16 23 H 0.07 2.89 7.82 -2.39 -0.02 2.87 16 24 H 0.12 3.66 6.85 -2.91 -0.02 3.64 16 25 H 0.42 8.81 9.28 -74.06 -0.69 8.12 16 26 H 0.01 0.35 7.94 -2.38 -0.02 0.33 16 27 H 0.09 4.35 5.68 -2.38 -0.01 4.34 16 28 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 29 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -61.12 271.29 1.54 -59.59 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.42 Total: 14.25 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.04 Total: -19.88 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -4.37 Total: -86.83 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.58 Total: -13.98 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -61.12 1.54 -59.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714618706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.544 kcal (2) G-P(sol) polarization free energy of solvation -61.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds