Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47015 * 2 1 4 4 C 1.50700 * 109.46991 * 119.99737 * 2 1 3 5 5 H 1.07999 * 119.99342 * 120.00174 * 4 2 1 6 6 C 1.37871 * 120.00422 * 300.00414 * 4 2 1 7 7 N 1.31514 * 119.99977 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46983 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47022 * 119.99386 * 8 6 4 11 11 H 1.48495 * 109.47097 * 239.99954 * 8 6 4 12 12 N 1.46499 * 109.47074 * 240.00245 * 2 1 3 13 13 C 1.34775 * 120.00113 * 85.00055 * 12 2 1 14 14 O 1.21289 * 119.99837 * 359.97438 * 13 12 2 15 15 C 1.50692 * 120.00347 * 179.97438 * 13 12 2 16 16 H 1.09008 * 115.54779 * 34.27688 * 15 13 12 17 17 C 1.53000 * 117.50104 * 248.61074 * 15 13 12 18 18 C 1.53002 * 60.02940 * 252.47218 * 17 15 13 19 19 H 1.08999 * 117.49664 * 252.51862 * 18 17 15 20 20 C 1.52999 * 117.49968 * 107.50530 * 18 17 15 21 21 N 1.46900 * 109.47626 * 116.38753 * 20 18 17 22 22 H 1.08998 * 109.47074 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47370 * 299.99817 * 1 2 3 24 24 H 1.08998 * 109.47094 * 59.99817 * 1 2 3 25 25 H 0.96998 * 119.99627 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99888 * 264.99948 * 12 2 1 27 27 H 1.09002 * 117.49833 * 359.97323 * 17 15 13 28 28 H 1.09002 * 117.49953 * 144.97364 * 17 15 13 29 29 H 1.09007 * 109.46856 * 236.39135 * 20 18 17 30 30 H 1.09004 * 109.46879 * 356.38351 * 20 18 17 31 31 H 1.00904 * 110.99806 * 56.04321 * 21 20 18 32 32 H 1.00898 * 110.99851 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.1454 -2.2878 3.6037 10 1 3.1466 -0.1875 4.8165 11 1 1.1660 -1.5868 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1585 -2.4116 15 6 2.6499 -0.7283 -3.5874 16 1 2.3536 -1.7731 -3.6813 17 6 4.0315 -0.3358 -4.1147 18 6 2.7740 0.0894 -4.8754 19 1 2.5593 -0.4176 -5.8161 20 6 2.3779 1.5661 -4.8161 21 7 2.4500 2.1470 -6.1635 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7095 1.1617 3.4844 26 1 2.2490 -1.6317 -1.1527 27 1 4.5766 0.4364 -3.5718 28 1 4.6443 -1.1224 -4.5550 29 1 1.3599 1.6542 -4.4364 30 1 3.0602 2.0989 -4.1537 31 1 1.8751 1.6297 -6.8115 32 1 2.1924 3.1224 -6.1509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715100977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -21.672086 kcal Electronic energy + Delta-G solvation = -14148.622460 eV Core-core repulsion = 11723.536668 eV Total energy + Delta-G solvation = -2425.085792 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.49572 -36.68659 -34.61141 -33.30222 -32.30745 -29.01223 -25.34316 -25.14721 -23.82872 -21.06937 -20.27503 -19.27065 -17.00560 -16.10958 -15.66524 -15.12802 -14.67953 -14.30065 -14.09510 -13.62093 -13.02416 -12.53205 -12.38675 -12.13358 -11.67328 -11.17900 -11.09806 -10.97160 -10.78584 -10.32369 -10.25434 -10.12450 -10.02659 -9.04435 -9.01155 -8.57599 -8.33830 -7.88251 -6.12969 -4.22078 3.17562 3.23392 3.31063 3.33964 3.96142 4.19184 4.37737 4.57238 5.08131 5.14824 5.19525 5.25860 5.49483 5.60961 5.85861 5.89928 6.13929 6.17924 6.54597 6.82045 6.96385 7.14870 7.25572 7.47443 7.53208 7.57592 7.69970 7.91710 8.14733 8.69497 8.78891 9.16109 9.46003 10.93152 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057600 B = 0.006676 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.996598 B = 4192.924583 C = 4425.688720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.529 3.471 14 O -0.555 6.555 15 C -0.189 4.189 16 H 0.117 0.883 17 C -0.148 4.148 18 C -0.116 4.116 19 H 0.106 0.894 20 C 0.098 3.902 21 N -0.857 5.857 22 H 0.026 0.974 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.264 0.736 26 H 0.389 0.611 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.332 0.668 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -3.261 -11.609 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.352 5.352 13 C 0.314 3.686 14 O -0.434 6.434 15 C -0.211 4.211 16 H 0.135 0.865 17 C -0.185 4.185 18 C -0.135 4.135 19 H 0.125 0.875 20 C -0.032 4.032 21 N -0.386 5.386 22 H 0.045 0.955 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.221 0.779 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.143 0.857 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.794 -2.474 -11.393 11.988 hybrid contribution -0.669 -0.931 1.082 1.577 sum 2.124 -3.405 -10.310 11.064 Atomic orbital electron populations 1.22074 0.98523 0.99069 1.00837 1.18744 0.90980 0.93993 0.80098 0.93414 1.21265 1.32303 1.13188 0.90338 0.92026 1.24896 0.94816 0.94962 0.99092 1.69915 1.36009 1.22505 1.23761 0.86387 0.78601 0.79535 0.82543 1.19725 1.20857 1.20875 1.46485 1.64698 1.13613 1.10365 1.19528 0.78318 0.86912 0.83871 1.90626 1.51819 1.16063 1.84920 1.22465 1.03122 1.00513 0.94976 0.86469 1.22992 0.89607 1.03364 1.02562 1.22217 1.01341 0.96048 0.93941 0.87549 1.21435 1.01352 0.91717 0.88660 1.58849 1.63015 1.07037 1.09700 0.95513 0.89172 0.96725 0.92640 0.77905 0.88278 0.88301 0.93306 0.90179 0.85651 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.70 -14.90 5.07 -54.93 -0.28 -15.17 16 13 C 0.53 10.60 7.56 -10.99 -0.08 10.52 16 14 O -0.55 -12.89 12.78 5.55 0.07 -12.82 16 15 C -0.19 -2.82 6.19 -91.74 -0.57 -3.39 16 16 H 0.12 1.47 8.14 -51.92 -0.42 1.04 16 17 C -0.15 -1.97 9.88 -26.73 -0.26 -2.24 16 18 C -0.12 -1.60 5.95 -90.58 -0.54 -2.14 16 19 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 20 C 0.10 1.49 5.33 -3.82 -0.02 1.47 16 21 N -0.86 -10.50 9.62 -10.37 -0.10 -10.60 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.39 7.17 8.54 -40.82 -0.35 6.82 16 27 H 0.10 1.46 8.03 -51.93 -0.42 1.04 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.85 6.93 -51.93 -0.36 0.49 16 30 H 0.08 1.40 7.30 -51.93 -0.38 1.03 16 31 H 0.33 3.43 8.98 -39.29 -0.35 3.08 16 32 H 0.34 3.73 9.08 -39.29 -0.36 3.37 16 LS Contribution 269.66 15.07 4.06 4.06 Total: -1.00 -30.11 269.66 -6.92 -37.02 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.58 Total: 11.63 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.70 Total: -5.37 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.25 Total: -50.22 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.11 -6.92 -37.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715100977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.351 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds