Wall clock time and date at job start Mon Mar 30 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00083 * 2 1 4 4 C 1.50696 * 109.47011 * 269.99595 * 3 2 1 5 5 H 1.07997 * 120.00012 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00069 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 C 1.34781 * 120.00135 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00162 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99657 * 0.02562 * 12 2 1 15 15 H 1.08995 * 115.55167 * 34.27635 * 14 12 2 16 16 C 1.53001 * 117.49584 * 248.61026 * 14 12 2 17 17 C 1.52996 * 117.49563 * 179.97438 * 14 12 2 18 18 H 1.08998 * 117.50432 * 359.97438 * 17 14 12 19 19 C 1.53006 * 117.49607 * 214.97572 * 17 14 12 20 20 N 1.46902 * 109.46975 * 175.00226 * 19 17 14 21 21 H 1.09003 * 109.46916 * 89.99948 * 1 2 3 22 22 H 1.08996 * 109.47229 * 210.00289 * 1 2 3 23 23 H 1.08999 * 109.47029 * 330.00209 * 1 2 3 24 24 H 1.09008 * 109.47050 * 149.99791 * 3 2 1 25 25 H 1.08991 * 109.47237 * 29.99935 * 3 2 1 26 26 H 0.97000 * 119.99838 * 359.97438 * 7 6 4 27 27 H 1.08999 * 117.50140 * 359.97438 * 16 14 12 28 28 H 1.08999 * 117.49720 * 145.02425 * 16 14 12 29 29 H 1.09003 * 109.47017 * 295.00098 * 19 17 14 30 30 H 1.08997 * 109.46657 * 55.00084 * 19 17 14 31 31 H 1.00897 * 110.99513 * 180.02562 * 20 19 17 32 32 H 1.00902 * 110.99677 * 303.95707 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.3065 4.2601 -3.9002 10 1 4.6970 4.2007 -3.4967 11 1 3.5541 2.2204 -4.3049 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 1 0.4468 -2.4733 -0.5536 16 6 1.4603 -3.3313 1.2645 17 6 2.2074 -3.7626 0.0005 18 1 3.2933 -3.6677 0.0001 19 6 1.6491 -4.9560 -0.7775 20 7 2.6266 -6.0524 -0.7602 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 3.1500 1.1384 0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.3916 3.3381 0.2414 27 1 2.0549 -2.9527 2.0958 28 1 0.5712 -3.8977 1.5415 29 1 0.7206 -5.2896 -0.3140 30 1 1.4545 -4.6588 -1.8080 31 1 2.2811 -6.8528 -1.2682 32 1 3.5168 -5.7490 -1.1258 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715131647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:40 Heat of formation + Delta-G solvation = -17.591204 kcal Electronic energy + Delta-G solvation = -14066.589235 eV Core-core repulsion = 11641.680403 eV Total energy + Delta-G solvation = -2424.908832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50976 -36.95331 -34.88428 -33.49165 -32.74179 -27.75253 -26.13664 -25.27982 -23.84505 -22.06500 -20.62255 -18.50031 -17.01198 -16.57684 -16.01148 -15.28164 -14.66329 -14.42534 -14.21536 -13.72699 -13.34218 -12.89161 -12.42215 -12.25092 -12.04032 -11.77285 -11.31730 -11.24591 -10.91724 -10.57996 -10.31002 -10.12252 -10.08851 -9.12690 -9.01164 -8.79073 -8.37960 -7.61227 -6.38382 -4.10010 3.09665 3.41907 3.48099 3.63281 3.77388 4.05831 4.45196 4.54335 4.77741 4.96581 5.09916 5.31779 5.37041 5.40448 5.49572 5.58276 5.63199 5.76364 5.91118 6.06342 6.14223 6.36538 6.80821 6.95932 7.12235 7.26867 7.41206 8.04355 8.29932 8.43937 8.78205 9.03058 9.59731 10.99065 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.007078 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.239154 B = 3954.726424 C = 4249.026206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.596 5.596 3 C 0.235 3.765 4 C -0.606 4.606 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.910 5.910 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.289 1.289 12 C 0.534 3.466 13 O -0.542 6.542 14 C -0.183 4.183 15 H 0.118 0.882 16 C -0.145 4.145 17 C -0.120 4.120 18 H 0.118 0.882 19 C 0.093 3.907 20 N -0.849 5.849 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.022 0.978 26 H 0.268 0.732 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.340 0.660 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -14.011 0.572 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.327 5.327 3 C 0.115 3.885 4 C -0.644 4.644 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.546 5.546 8 Si 0.903 3.097 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.216 1.216 12 C 0.320 3.680 13 O -0.420 6.420 14 C -0.205 4.205 15 H 0.136 0.864 16 C -0.183 4.183 17 C -0.139 4.139 18 H 0.136 0.864 19 C -0.038 4.038 20 N -0.379 5.379 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.152 0.848 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.658 -12.761 0.447 14.400 hybrid contribution -0.936 -0.959 -0.212 1.357 sum -7.594 -13.720 0.235 15.683 Atomic orbital electron populations 1.21610 0.81179 1.01681 1.01144 1.47859 1.06231 1.07244 1.71412 1.19369 0.92006 0.78940 0.98173 1.22273 1.40639 1.09576 0.91947 0.93089 1.25828 0.93289 0.93320 1.06087 1.70774 1.44120 1.39637 1.00108 0.83460 0.76848 0.75589 0.73792 1.21411 1.20814 1.21565 1.19402 0.87371 0.84105 0.77097 1.90650 1.13886 1.87081 1.50423 1.22405 1.02061 0.91336 1.04696 0.86437 1.23011 1.02511 1.01338 0.91417 1.22264 0.99734 0.92275 0.99666 0.86374 1.21348 0.95029 0.89763 0.97665 1.58682 1.06619 1.08693 1.63907 0.93265 0.92207 0.91565 0.94885 0.96041 0.92219 0.88435 0.88177 0.90852 0.94958 0.84792 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.05 59.84 0.60 2.06 16 2 N -0.60 -13.26 2.86 -182.96 -0.52 -13.78 16 3 C 0.23 6.32 4.52 -5.19 -0.02 6.30 16 4 C -0.61 -17.85 9.39 -34.44 -0.32 -18.17 16 5 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 7 N -0.91 -28.24 13.65 55.43 0.76 -27.48 16 8 Si 1.08 26.08 29.90 -169.99 -5.08 21.00 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 C 0.53 11.68 7.46 -10.98 -0.08 11.60 16 13 O -0.54 -14.28 15.84 5.56 0.09 -14.19 16 14 C -0.18 -2.88 4.52 -91.77 -0.41 -3.29 16 15 H 0.12 1.58 7.26 -51.93 -0.38 1.21 16 16 C -0.15 -1.92 9.88 -26.71 -0.26 -2.19 16 17 C -0.12 -1.72 5.47 -90.60 -0.50 -2.21 16 18 H 0.12 1.97 7.66 -51.93 -0.40 1.57 16 19 C 0.09 1.03 7.07 -3.82 -0.03 1.01 16 20 N -0.85 -8.66 9.62 -10.36 -0.10 -8.76 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.78 6.64 -51.93 -0.34 0.44 16 23 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 24 H 0.03 0.99 7.29 -51.92 -0.38 0.61 16 25 H 0.02 0.57 7.76 -51.93 -0.40 0.17 16 26 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.10 1.04 8.03 -51.93 -0.42 0.63 16 29 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.34 2.65 9.08 -39.29 -0.36 2.30 16 32 H 0.34 3.43 8.98 -39.29 -0.35 3.07 16 LS Contribution 274.92 15.07 4.14 4.14 Total: -1.00 -34.78 274.92 -6.46 -41.24 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.61 Total: 2.28 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.13 Total: -4.45 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.13 Total: -50.02 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.78 -6.46 -41.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715131647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.645 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds