Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 120.00084 * 2 1 4 4 C 1.50701 * 109.47017 * 270.00039 * 3 2 1 5 5 H 1.08005 * 119.99715 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99646 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00335 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99592 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47318 * 60.00417 * 8 6 4 10 10 H 1.48503 * 109.46905 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47559 * 300.00140 * 8 6 4 12 12 C 1.34774 * 119.99551 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99969 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00794 * 359.97438 * 12 2 1 15 15 H 1.08999 * 115.55804 * 325.70687 * 14 12 2 16 16 C 1.53002 * 117.50044 * 111.38850 * 14 12 2 17 17 C 1.53000 * 60.02940 * 107.50594 * 16 14 12 18 18 H 1.08999 * 117.49959 * 252.49451 * 17 16 14 19 19 C 1.53003 * 117.49792 * 107.48056 * 17 16 14 20 20 N 1.46891 * 109.47428 * 116.39113 * 19 17 16 21 21 H 1.08992 * 109.46927 * 270.00093 * 1 2 3 22 22 H 1.09001 * 109.46645 * 30.00159 * 1 2 3 23 23 H 1.08995 * 109.47080 * 149.99937 * 1 2 3 24 24 H 1.09000 * 109.46934 * 29.99809 * 3 2 1 25 25 H 1.08998 * 109.46786 * 150.00200 * 3 2 1 26 26 H 0.97001 * 120.00575 * 179.97438 * 7 6 4 27 27 H 1.09002 * 117.49918 * 0.02562 * 16 14 12 28 28 H 1.09002 * 117.49754 * 215.00777 * 16 14 12 29 29 H 1.08998 * 109.47090 * 236.39620 * 19 17 16 30 30 H 1.09001 * 109.47114 * 356.38887 * 19 17 16 31 31 H 1.00895 * 111.00528 * 56.04451 * 20 19 17 32 32 H 1.00908 * 111.00398 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6732 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4339 11 1 4.2414 2.3821 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.4470 -2.4736 0.5539 16 6 1.4604 -3.3314 -1.2644 17 6 2.2076 -3.7635 -0.0011 18 1 3.2935 -3.6691 -0.0015 19 6 1.6491 -4.9569 0.7766 20 7 2.6261 -6.0536 0.7587 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 4.0303 4.4440 -0.8503 27 1 2.0550 -2.9527 -2.0958 28 1 0.5711 -3.8974 -1.5416 29 1 1.4547 -4.6601 1.8072 30 1 0.7204 -5.2900 0.3132 31 1 3.5164 -5.7509 1.1242 32 1 2.2801 -6.8545 1.2659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715131651.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -14.205009 kcal Electronic energy + Delta-G solvation = -14042.483507 eV Core-core repulsion = 11617.721512 eV Total energy + Delta-G solvation = -2424.761996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.40416 -36.85972 -34.72220 -33.43885 -32.52500 -28.05039 -26.05541 -25.36132 -23.94446 -21.88032 -20.52460 -18.30525 -16.57189 -16.47462 -15.98512 -15.22154 -14.58323 -14.46306 -14.33489 -13.81018 -13.37965 -12.69967 -12.27272 -12.12601 -11.93933 -11.69476 -11.22014 -11.16278 -10.89921 -10.57278 -10.23192 -10.14004 -10.02677 -9.61762 -8.90466 -8.75373 -8.41705 -7.61032 -6.02498 -4.07373 3.19892 3.33348 3.37550 3.41066 3.81479 4.20357 4.43838 4.52402 4.84672 5.05150 5.16018 5.30648 5.41250 5.43283 5.52976 5.62674 5.74126 5.87058 5.96592 6.18340 6.25633 6.42797 6.98192 7.08685 7.28878 7.45872 7.57254 7.93945 8.25364 8.45909 8.92068 9.13863 9.57725 11.05576 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047126 B = 0.006772 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.003856 B = 4133.979276 C = 4267.433615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.532 3.468 13 O -0.543 6.543 14 C -0.184 4.184 15 H 0.116 0.884 16 C -0.144 4.144 17 C -0.123 4.123 18 H 0.118 0.882 19 C 0.093 3.907 20 N -0.849 5.849 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.344 0.656 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -13.417 2.852 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.319 3.681 13 O -0.421 6.421 14 C -0.205 4.205 15 H 0.134 0.866 16 C -0.181 4.181 17 C -0.142 4.142 18 H 0.136 0.864 19 C -0.037 4.037 20 N -0.379 5.379 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.975 -13.180 2.114 15.061 hybrid contribution 0.015 0.646 0.084 0.651 sum -6.960 -12.535 2.198 14.505 Atomic orbital electron populations 1.21621 0.81453 1.02595 1.00232 1.48065 1.06206 1.07616 1.71225 1.19292 0.92539 0.78076 0.97516 1.21403 1.36595 1.06245 0.92280 0.92525 1.24936 0.95338 0.96365 0.97463 1.69920 1.38370 1.14376 1.30809 0.86550 0.78362 0.77809 0.84646 1.20236 1.21150 1.20180 1.19403 0.87393 0.84136 0.77195 1.90654 1.13861 1.87101 1.50491 1.22423 1.01862 0.91422 1.04836 0.86583 1.23002 1.02425 1.01119 0.91564 1.22267 0.99721 0.92244 0.99960 0.86397 1.21342 0.95040 0.89802 0.97530 1.58650 1.06603 1.08679 1.63991 0.93941 0.90853 0.92257 0.94993 0.93891 0.92664 0.88238 0.88281 0.95107 0.90889 0.84363 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.01 59.85 0.60 2.00 16 2 N -0.60 -13.24 2.86 -182.95 -0.52 -13.77 16 3 C 0.24 6.60 5.16 -5.19 -0.03 6.58 16 4 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.03 13.28 55.43 0.74 -26.29 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 C 0.53 11.58 7.46 -10.99 -0.08 11.50 16 13 O -0.54 -14.23 15.84 5.55 0.09 -14.14 16 14 C -0.18 -2.88 4.52 -91.74 -0.41 -3.30 16 15 H 0.12 1.50 7.26 -51.93 -0.38 1.13 16 16 C -0.14 -2.02 9.88 -26.73 -0.26 -2.29 16 17 C -0.12 -1.76 5.47 -90.58 -0.50 -2.25 16 18 H 0.12 1.97 7.66 -51.93 -0.40 1.57 16 19 C 0.09 1.02 7.07 -3.83 -0.03 1.00 16 20 N -0.85 -8.55 9.62 -10.37 -0.10 -8.65 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.23 8.07 -51.93 -0.42 0.82 16 23 H 0.06 0.81 6.64 -51.93 -0.34 0.47 16 24 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 25 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.10 1.11 8.03 -51.93 -0.42 0.69 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 31 H 0.34 3.33 8.98 -39.29 -0.35 2.98 16 32 H 0.34 2.59 9.08 -39.29 -0.36 2.23 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -33.73 276.51 -6.48 -40.20 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.69 Total: 2.02 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.13 Total: -0.69 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.11 Total: -48.71 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.73 -6.48 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715131651.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.997 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds