Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46503 * 120.00084 * 2 1 4 4 C 1.50701 * 109.47017 * 270.00039 * 3 2 1 5 5 H 1.08005 * 119.99715 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99646 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00335 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99592 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47318 * 60.00417 * 8 6 4 10 10 H 1.48503 * 109.46905 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47559 * 300.00140 * 8 6 4 12 12 C 1.34774 * 119.99551 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99969 * 180.02562 * 12 2 1 14 14 C 1.50695 * 120.00794 * 359.97438 * 12 2 1 15 15 H 1.08999 * 115.55804 * 325.70687 * 14 12 2 16 16 C 1.53002 * 117.50044 * 111.38850 * 14 12 2 17 17 C 1.53000 * 60.02940 * 107.50594 * 16 14 12 18 18 H 1.08999 * 117.49959 * 252.49451 * 17 16 14 19 19 C 1.53003 * 117.49792 * 107.48056 * 17 16 14 20 20 N 1.46891 * 109.47428 * 116.39113 * 19 17 16 21 21 H 1.08992 * 109.46927 * 270.00093 * 1 2 3 22 22 H 1.09001 * 109.46645 * 30.00159 * 1 2 3 23 23 H 1.08995 * 109.47080 * 149.99937 * 1 2 3 24 24 H 1.09000 * 109.46934 * 29.99809 * 3 2 1 25 25 H 1.08998 * 109.46786 * 150.00200 * 3 2 1 26 26 H 0.97001 * 120.00575 * 179.97438 * 7 6 4 27 27 H 1.09002 * 117.49918 * 0.02562 * 16 14 12 28 28 H 1.09002 * 117.49754 * 215.00777 * 16 14 12 29 29 H 1.08998 * 109.47090 * 236.39620 * 19 17 16 30 30 H 1.09001 * 109.47114 * 356.38887 * 19 17 16 31 31 H 1.00895 * 111.00528 * 56.04451 * 20 19 17 32 32 H 1.00908 * 111.00398 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6732 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5936 -4.1347 10 1 4.1805 4.7029 -3.4339 11 1 4.2414 2.3821 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.4470 -2.4736 0.5539 16 6 1.4604 -3.3314 -1.2644 17 6 2.2076 -3.7635 -0.0011 18 1 3.2935 -3.6691 -0.0015 19 6 1.6491 -4.9569 0.7766 20 7 2.6261 -6.0536 0.7587 21 1 -0.3633 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1383 0.5138 26 1 4.0303 4.4440 -0.8503 27 1 2.0550 -2.9527 -2.0958 28 1 0.5711 -3.8974 -1.5416 29 1 1.4547 -4.6601 1.8072 30 1 0.7204 -5.2900 0.3132 31 1 3.5164 -5.7509 1.1242 32 1 2.2801 -6.8545 1.2659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715131651.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -39.869985 kcal Electronic energy + Delta-G solvation = -14043.596424 eV Core-core repulsion = 11617.721512 eV Total energy + Delta-G solvation = -2425.874912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97525 -38.16590 -36.55177 -34.77162 -34.27761 -30.06077 -27.48219 -26.65513 -25.55647 -23.54244 -21.62183 -19.87579 -18.70289 -18.08458 -17.29330 -16.68912 -16.21555 -16.08471 -15.36658 -15.21482 -14.65916 -14.27171 -13.93739 -13.70949 -13.47584 -13.15633 -13.03916 -12.80303 -12.56576 -12.26632 -12.17973 -11.77289 -11.40902 -11.16681 -10.66697 -10.62754 -9.55036 -9.44834 -8.24747 -6.40373 1.34890 1.39715 1.47005 1.65011 2.25051 2.41563 2.91047 3.04430 3.49325 3.70664 3.87898 4.13007 4.18052 4.39073 4.46489 4.60999 4.70934 4.74516 4.84822 4.92189 4.98216 5.07494 5.19307 5.33453 5.53510 5.82043 6.03052 6.22556 6.62810 6.66479 6.76549 7.25251 7.45717 8.82321 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047126 B = 0.006772 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.003856 B = 4133.979276 C = 4267.433615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.604 6.604 14 C -0.184 4.184 15 H 0.156 0.844 16 C -0.131 4.131 17 C -0.121 4.121 18 H 0.083 0.917 19 C 0.102 3.898 20 N -0.858 5.858 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.025 0.975 25 H -0.005 1.005 26 H 0.268 0.732 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.343 0.657 32 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -14.894 2.007 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.487 6.487 14 C -0.205 4.205 15 H 0.174 0.826 16 C -0.168 4.168 17 C -0.140 4.140 18 H 0.102 0.898 19 C -0.029 4.029 20 N -0.390 5.390 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.114 0.886 24 H 0.043 0.957 25 H 0.013 0.987 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.155 0.845 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.258 -14.682 1.280 17.404 hybrid contribution 0.737 1.094 0.393 1.376 sum -8.522 -13.588 1.673 16.126 Atomic orbital electron populations 1.21936 0.77686 1.04047 1.02581 1.48121 1.08573 1.06156 1.70956 1.18773 0.91026 0.80421 0.96153 1.21662 1.37190 1.06645 0.92916 0.92975 1.25891 0.94748 0.96316 1.02217 1.70041 1.38776 1.14813 1.33205 0.85439 0.78932 0.77369 0.78892 1.18261 1.20106 1.20443 1.20521 0.87152 0.85945 0.75560 1.90614 1.16816 1.88165 1.53058 1.22345 1.02823 0.88182 1.07171 0.82604 1.23134 1.03447 1.00085 0.90160 1.22312 0.98041 0.92889 1.00777 0.89831 1.21310 0.95564 0.88480 0.97537 1.58633 1.06645 1.09106 1.64607 0.91057 0.91594 0.88633 0.95680 0.98703 0.92300 0.90824 0.84009 0.94230 0.88652 0.84459 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.01 127.77 1.28 3.72 16 2 N -0.61 -27.06 2.86 -851.13 -2.43 -29.50 16 3 C 0.26 14.50 5.16 85.63 0.44 14.94 16 4 C -0.55 -32.50 9.39 25.60 0.24 -32.26 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.43 5.46 84.66 0.46 0.89 16 7 N -0.93 -57.37 13.28 21.45 0.28 -57.09 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 12 C 0.52 22.90 7.46 87.66 0.65 23.55 16 13 O -0.60 -33.41 15.84 -3.05 -0.05 -33.46 16 14 C -0.18 -5.38 4.52 -11.52 -0.05 -5.43 16 15 H 0.16 3.31 7.26 -2.39 -0.02 3.29 16 16 C -0.13 -3.35 9.88 30.60 0.30 -3.05 16 17 C -0.12 -3.27 5.47 -10.77 -0.06 -3.33 16 18 H 0.08 2.87 7.66 -2.39 -0.02 2.85 16 19 C 0.10 1.90 7.07 86.31 0.61 2.51 16 20 N -0.86 -15.33 9.62 -186.73 -1.80 -17.13 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 23 H 0.10 2.24 6.64 -2.39 -0.02 2.23 16 24 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 25 H -0.01 -0.34 7.42 -2.39 -0.02 -0.35 16 26 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.14 2.45 8.03 -2.39 -0.02 2.43 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 1.40 7.88 -2.39 -0.02 1.38 16 31 H 0.34 6.27 8.98 -89.70 -0.81 5.46 16 32 H 0.35 4.44 9.08 -89.69 -0.81 3.63 16 Total: -1.00 -77.30 276.51 1.42 -75.89 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.50 Total: 11.97 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 3.88 Total: 1.54 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.94 Total: -103.71 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.30 1.42 -75.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715131651.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.017 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds