Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46894 * 111.00220 * 274.99988 * 12 2 1 14 14 C 1.53780 * 113.61567 * 252.49526 * 13 12 2 15 15 C 1.53773 * 87.08303 * 220.01564 * 14 13 12 16 16 C 1.50702 * 113.69668 * 270.87386 * 15 14 13 17 17 N 1.34777 * 119.99693 * 277.53751 * 16 15 14 18 18 O 1.21277 * 119.99874 * 97.53298 * 16 15 14 19 19 C 1.53781 * 87.08343 * 25.43529 * 15 14 13 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99838 * 151.04516 * 12 2 1 25 25 H 1.09005 * 112.84851 * 23.80684 * 13 12 2 26 26 H 1.08993 * 113.61450 * 334.56937 * 14 13 12 27 27 H 1.09002 * 113.61150 * 105.47231 * 14 13 12 28 28 H 1.09007 * 113.61660 * 139.97719 * 15 14 13 29 29 H 0.96994 * 120.00283 * 359.97438 * 17 16 15 30 30 H 0.97004 * 119.99578 * 179.97438 * 17 16 15 31 31 H 1.08998 * 113.61641 * 220.01819 * 19 15 14 32 32 H 1.08999 * 113.69166 * 89.12021 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 6 3.5153 0.6155 2.7437 15 6 3.0600 0.4912 4.2072 16 6 2.4966 1.7677 4.7767 17 7 3.3263 2.7171 5.2527 18 8 1.2966 1.9405 4.8066 19 6 1.9845 -0.4878 3.7073 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 0.7092 1.1618 -3.4843 24 1 2.9173 -1.1205 1.0286 25 1 1.4067 1.0721 2.2482 26 1 4.2656 -0.1208 2.4558 27 1 3.7852 1.6314 2.4552 28 1 3.8025 0.0290 4.8578 29 1 4.2860 2.5787 5.2290 30 1 2.9636 3.5389 5.6189 31 1 1.0187 -0.3626 4.1967 32 1 2.3150 -1.5262 3.6825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716732351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -26.446214 kcal Electronic energy + Delta-G solvation = -14219.134102 eV Core-core repulsion = 11793.841288 eV Total energy + Delta-G solvation = -2425.292814 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20747 -37.44980 -34.60548 -33.60853 -31.78297 -28.09178 -25.43590 -25.18094 -24.54049 -21.28568 -19.78483 -19.03763 -17.05845 -16.72121 -16.30004 -15.17262 -14.96046 -14.43248 -14.05782 -13.55620 -12.87783 -12.61434 -12.14030 -11.95635 -11.46753 -11.33950 -10.93715 -10.65616 -10.48775 -10.32354 -10.10902 -9.99941 -9.76393 -9.69622 -9.58264 -8.76413 -8.44748 -7.19093 -5.99528 -4.06188 2.68533 3.29906 3.37776 3.41661 3.53629 4.42156 4.71896 4.89205 4.95675 5.16948 5.31206 5.44883 5.74860 5.84167 6.02587 6.07194 6.43738 6.45129 6.71286 6.76254 6.96611 7.23766 7.30393 7.33028 7.59332 7.81579 7.95429 8.30976 8.32563 8.45982 8.72103 9.05845 9.59712 11.06763 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054779 B = 0.006632 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.022272 B = 4221.146932 C = 4298.219000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.077 3.923 14 C -0.151 4.151 15 C -0.145 4.145 16 C 0.535 3.465 17 N -0.858 5.858 18 O -0.536 6.536 19 C -0.111 4.111 20 H 0.031 0.969 21 H 0.005 0.995 22 H 0.079 0.921 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.400 0.600 30 H 0.398 0.602 31 H 0.076 0.924 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 1.443 12.587 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.306 5.306 13 C -0.035 4.035 14 C -0.191 4.191 15 C -0.167 4.167 16 C 0.320 3.680 17 N -0.422 5.422 18 O -0.412 6.412 19 C -0.150 4.150 20 H 0.050 0.950 21 H 0.024 0.976 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.228 0.772 30 H 0.229 0.771 31 H 0.094 0.906 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.809 1.228 12.510 13.847 hybrid contribution 1.511 0.502 -0.896 1.828 sum 7.321 1.731 11.613 13.837 Atomic orbital electron populations 1.21725 0.97916 0.99344 0.99406 1.19121 0.92630 0.92312 0.85628 0.98180 1.21312 1.31336 1.12434 0.90520 0.92208 1.24935 0.95086 0.95010 0.99060 1.69919 1.36696 1.22928 1.23300 0.86476 0.78594 0.79581 0.82935 1.19771 1.20985 1.21159 1.60605 1.31706 1.32262 1.06006 1.22982 0.93643 0.95286 0.91620 1.23686 1.00515 1.02300 0.92588 1.22321 1.01383 0.94909 0.98059 1.20256 0.86514 0.84914 0.76303 1.43847 1.10617 1.21451 1.66249 1.90742 1.15266 1.79610 1.55571 1.22999 0.97852 0.97501 0.96620 0.95000 0.97556 0.90206 0.93010 0.84996 0.89019 0.89022 0.91756 0.88531 0.77189 0.77132 0.90580 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.18 37.16 0.34 -2.95 16 2 C 0.21 5.48 2.45 -68.87 -0.17 5.31 16 3 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 4 C -0.52 -14.34 8.59 -34.44 -0.30 -14.64 16 5 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.68 -14.65 6.42 -100.10 -0.64 -15.29 16 13 C 0.08 1.43 3.53 -66.90 -0.24 1.19 16 14 C -0.15 -2.20 7.28 -25.92 -0.19 -2.39 16 15 C -0.14 -1.86 4.34 -90.96 -0.39 -2.26 16 16 C 0.54 7.48 7.36 -10.98 -0.08 7.40 16 17 N -0.86 -7.97 8.87 31.22 0.28 -7.70 16 18 O -0.54 -9.96 16.59 5.56 0.09 -9.87 16 19 C -0.11 -1.74 7.25 -25.92 -0.19 -1.93 16 20 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.01 0.14 7.74 -51.93 -0.40 -0.27 16 22 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.33 6.81 7.69 -39.29 -0.30 6.50 16 25 H 0.09 1.98 7.42 -51.93 -0.39 1.60 16 26 H 0.09 1.22 7.82 -51.93 -0.41 0.81 16 27 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 30 H 0.40 3.26 8.93 -40.82 -0.36 2.90 16 31 H 0.08 1.30 7.43 -51.93 -0.39 0.92 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -32.11 267.58 -6.49 -38.60 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.55 Total: 7.77 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.31 Total: -8.65 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.26 Total: -48.25 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.11 -6.49 -38.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716732351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.159 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds