Wall clock time and date at job start Mon Mar 30 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46894 * 111.00220 * 274.99988 * 12 2 1 14 14 C 1.53780 * 113.61567 * 252.49526 * 13 12 2 15 15 C 1.53773 * 87.08303 * 220.01564 * 14 13 12 16 16 C 1.50702 * 113.69668 * 270.87386 * 15 14 13 17 17 N 1.34777 * 119.99693 * 277.53751 * 16 15 14 18 18 O 1.21277 * 119.99874 * 97.53298 * 16 15 14 19 19 C 1.53781 * 87.08343 * 25.43529 * 15 14 13 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99838 * 151.04516 * 12 2 1 25 25 H 1.09005 * 112.84851 * 23.80684 * 13 12 2 26 26 H 1.08993 * 113.61450 * 334.56937 * 14 13 12 27 27 H 1.09002 * 113.61150 * 105.47231 * 14 13 12 28 28 H 1.09007 * 113.61660 * 139.97719 * 15 14 13 29 29 H 0.96994 * 120.00283 * 359.97438 * 17 16 15 30 30 H 0.97004 * 119.99578 * 179.97438 * 17 16 15 31 31 H 1.08998 * 113.61641 * 220.01819 * 19 15 14 32 32 H 1.08999 * 113.69166 * 89.12021 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 6 3.5153 0.6155 2.7437 15 6 3.0600 0.4912 4.2072 16 6 2.4966 1.7677 4.7767 17 7 3.3263 2.7171 5.2527 18 8 1.2966 1.9405 4.8066 19 6 1.9845 -0.4878 3.7073 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 0.7092 1.1618 -3.4843 24 1 2.9173 -1.1205 1.0286 25 1 1.4067 1.0721 2.2482 26 1 4.2656 -0.1208 2.4558 27 1 3.7852 1.6314 2.4552 28 1 3.8025 0.0290 4.8578 29 1 4.2860 2.5787 5.2290 30 1 2.9636 3.5389 5.6189 31 1 1.0187 -0.3626 4.1967 32 1 2.3150 -1.5262 3.6825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716732351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:16 Heat of formation + Delta-G solvation = -52.441816 kcal Electronic energy + Delta-G solvation = -14220.261356 eV Core-core repulsion = 11793.841288 eV Total energy + Delta-G solvation = -2426.420068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.40185 -38.81334 -36.47557 -34.62958 -33.74015 -29.96919 -27.38390 -26.54174 -25.96668 -22.66311 -21.73180 -20.20744 -18.49546 -17.97762 -17.70181 -16.92787 -16.41175 -15.97559 -15.40042 -15.21890 -14.64700 -14.21684 -13.48560 -13.36884 -13.27567 -13.04586 -12.81868 -12.51763 -12.26707 -12.22996 -12.02813 -11.45141 -11.21956 -10.92490 -10.82327 -10.65021 -10.57101 -8.95485 -8.12428 -6.27555 1.42627 1.44521 1.56657 1.59610 2.42534 2.60728 3.16062 3.52423 3.66043 3.71570 3.97006 4.19944 4.38055 4.61927 4.80916 4.86211 4.88831 5.05235 5.09012 5.17178 5.24030 5.33431 5.50993 5.69720 5.84863 5.91251 6.20596 6.48584 6.52637 6.80499 7.07109 7.37688 7.43590 8.93923 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054779 B = 0.006632 C = 0.006513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.022272 B = 4221.146932 C = 4298.219000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.217 3.783 3 H -0.035 1.035 4 C -0.534 4.534 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.054 3.946 14 C -0.136 4.136 15 C -0.123 4.123 16 C 0.527 3.473 17 N -0.833 5.833 18 O -0.593 6.593 19 C -0.106 4.106 20 H 0.029 0.971 21 H 0.009 0.991 22 H 0.056 0.944 23 H 0.262 0.738 24 H 0.339 0.661 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.145 0.855 29 H 0.419 0.581 30 H 0.406 0.594 31 H 0.055 0.945 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 0.450 13.288 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H -0.017 1.017 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.305 5.305 13 C -0.058 4.058 14 C -0.175 4.175 15 C -0.145 4.145 16 C 0.312 3.688 17 N -0.397 5.397 18 O -0.473 6.473 19 C -0.144 4.144 20 H 0.048 0.952 21 H 0.028 0.972 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.158 0.842 25 H 0.070 0.930 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.163 0.837 29 H 0.251 0.749 30 H 0.238 0.762 31 H 0.074 0.926 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.172 0.252 13.252 15.571 hybrid contribution 0.790 0.872 -1.060 1.584 sum 8.961 1.124 12.191 15.172 Atomic orbital electron populations 1.21570 0.98555 0.98735 0.98433 1.18874 0.92168 0.90749 0.87399 1.01713 1.21631 1.31542 1.12671 0.91359 0.91692 1.25825 0.95161 0.95677 1.02349 1.70061 1.37702 1.24332 1.24107 0.85364 0.78038 0.78615 0.78721 1.18594 1.20849 1.20615 1.60520 1.32317 1.32653 1.04971 1.23075 0.96318 0.94518 0.91841 1.23572 0.97808 1.02790 0.93351 1.22211 1.00695 0.93751 0.97809 1.20558 0.86087 0.85940 0.76194 1.43637 1.11338 1.20581 1.64130 1.90732 1.17730 1.80713 1.58125 1.22945 0.98258 0.99035 0.94199 0.95183 0.97164 0.92487 0.92902 0.84171 0.93026 0.86727 0.91915 0.83742 0.74908 0.76238 0.92645 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.21 9.18 71.98 0.66 -5.55 16 2 C 0.22 11.55 2.45 44.17 0.11 11.66 16 3 H -0.03 -2.05 7.84 -2.39 -0.02 -2.07 16 4 C -0.53 -29.68 8.59 25.60 0.22 -29.46 16 5 H 0.06 3.47 7.62 -2.91 -0.02 3.45 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -54.67 11.32 21.45 0.24 -54.43 16 8 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 9 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.67 -29.22 6.42 -470.62 -3.02 -32.24 16 13 C 0.05 2.01 3.53 45.44 0.16 2.17 16 14 C -0.14 -3.64 7.28 31.12 0.23 -3.41 16 15 C -0.12 -2.81 4.34 -11.02 -0.05 -2.86 16 16 C 0.53 13.92 7.36 87.66 0.65 14.57 16 17 N -0.83 -13.33 8.87 -173.53 -1.54 -14.87 16 18 O -0.59 -22.27 16.59 -3.02 -0.05 -22.32 16 19 C -0.11 -3.18 7.25 31.12 0.23 -2.96 16 20 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.01 0.49 7.74 -2.39 -0.02 0.47 16 22 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.34 13.54 7.69 -89.69 -0.69 12.85 16 25 H 0.05 2.35 7.42 -2.38 -0.02 2.33 16 26 H 0.11 2.61 7.82 -2.39 -0.02 2.59 16 27 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 28 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.42 3.59 8.83 -92.71 -0.82 2.78 16 30 H 0.41 5.81 8.93 -92.71 -0.83 4.98 16 31 H 0.05 1.90 7.43 -2.39 -0.02 1.89 16 32 H 0.11 2.83 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -71.79 267.58 -0.88 -72.67 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -1.19 Total: 20.41 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 2.65 Total: -14.91 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -4.32 Total: -101.55 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.79 -0.88 -72.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716732351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.232 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds