Wall clock time and date at job start Mon Mar 30 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48492 * 109.47559 * 269.99748 * 3 2 1 5 5 H 1.48504 * 109.47296 * 30.00047 * 3 2 1 6 6 H 1.48509 * 109.47000 * 149.99553 * 3 2 1 7 7 C 1.37877 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47483 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47240 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47230 * 179.97438 * 12 11 10 14 14 C 1.42898 * 114.00186 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.53785 * 113.61570 * 274.13969 * 15 14 13 17 17 C 1.53956 * 87.02052 * 220.04627 * 16 15 14 18 18 C 1.53777 * 87.11087 * 25.36196 * 17 16 15 19 19 H 0.97002 * 119.99746 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46959 * 59.99969 * 9 7 2 21 21 H 1.09000 * 109.47374 * 299.99789 * 9 7 2 22 22 H 1.08998 * 109.47228 * 59.99699 * 10 9 7 23 23 H 1.09000 * 109.46829 * 300.00292 * 10 9 7 24 24 H 1.08998 * 109.47267 * 59.99561 * 11 10 9 25 25 H 1.09000 * 109.47194 * 299.99906 * 11 10 9 26 26 H 1.09001 * 109.47081 * 60.00049 * 12 11 10 27 27 H 1.08999 * 109.47384 * 299.99741 * 12 11 10 28 28 H 1.09002 * 109.47259 * 300.00293 * 14 13 12 29 29 H 1.09001 * 109.47074 * 60.00315 * 14 13 12 30 30 H 1.09001 * 112.85054 * 45.33390 * 15 14 13 31 31 H 1.09000 * 113.61195 * 334.56762 * 16 15 14 32 32 H 1.09001 * 113.61520 * 105.46896 * 16 15 14 33 33 H 1.09005 * 113.53676 * 270.80967 * 17 16 15 34 34 H 1.08993 * 113.66514 * 139.93360 * 17 16 15 35 35 H 1.09011 * 113.61618 * 220.09268 * 18 17 16 36 36 H 1.09000 * 113.69499 * 89.19666 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 8 1.7598 -7.3876 0.0005 14 6 2.5997 -8.5437 0.0005 15 6 1.7325 -9.8041 -0.0001 16 6 1.2990 -10.2544 1.4050 17 6 1.5513 -11.6978 0.9327 18 6 2.5420 -11.1089 -0.0854 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5570 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8718 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8894 24 1 0.8538 -5.0446 -0.8903 25 1 0.8532 -5.0451 0.8896 26 1 3.1004 -6.0923 0.8910 27 1 3.1017 -6.0923 -0.8890 28 1 3.2290 -8.5356 -0.8894 29 1 3.2290 -8.5356 0.8906 30 1 0.9111 -9.7524 -0.7148 31 1 1.9752 -9.9292 2.1957 32 1 0.2531 -10.0434 1.6278 33 1 0.6795 -12.1644 0.4740 34 1 2.0228 -12.3286 1.6862 35 1 2.4981 -11.5868 -1.0642 36 1 3.5591 -11.0173 0.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719677484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:55 Heat of formation + Delta-G solvation = -79.203209 kcal Electronic energy + Delta-G solvation = -13477.475553 eV Core-core repulsion = 11153.435368 eV Total energy + Delta-G solvation = -2324.040186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05919 -38.43496 -36.34320 -34.32082 -30.91881 -29.06465 -26.57784 -26.35669 -23.60751 -23.38411 -21.77130 -20.26929 -18.44337 -17.47373 -17.23652 -16.60269 -16.37431 -15.99911 -15.53845 -14.67187 -14.29827 -14.09011 -13.68765 -13.32293 -13.11186 -13.06142 -12.71343 -12.54391 -12.37634 -12.19069 -12.00943 -11.46980 -11.44652 -11.35856 -11.26155 -11.13400 -10.99785 -10.56173 -10.48283 -8.20213 -6.32094 1.40034 1.42046 1.53200 2.40644 2.69467 3.12633 3.69433 3.77353 3.88581 3.99056 4.05775 4.20071 4.40401 4.44860 4.54540 4.57419 4.61584 4.68826 4.85358 4.86961 4.87482 4.96246 5.09448 5.12761 5.15843 5.24292 5.27981 5.35534 5.52563 5.59379 5.74586 5.85212 6.23909 6.32759 6.85398 7.37366 8.91980 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.105378 B = 0.003706 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.646353 B = 7553.013994 C = 7685.070242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.110 4.110 12 C 0.071 3.929 13 O -0.411 6.411 14 C 0.065 3.935 15 C -0.118 4.118 16 C -0.141 4.141 17 C -0.136 4.136 18 C -0.125 4.125 19 H 0.264 0.736 20 H -0.010 1.010 21 H -0.010 1.010 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -21.065 0.775 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.148 4.148 12 C -0.005 4.005 13 O -0.331 6.331 14 C -0.011 4.011 15 C -0.136 4.136 16 C -0.179 4.179 17 C -0.174 4.174 18 C -0.162 4.162 19 H 0.073 0.927 20 H 0.008 0.992 21 H 0.008 0.992 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.309 -20.976 0.780 21.918 hybrid contribution 0.130 1.178 -0.034 1.186 sum 6.439 -19.797 0.746 20.832 Atomic orbital electron populations 1.70115 1.07941 1.27823 1.51707 1.26056 0.95815 1.03611 0.94692 0.85392 0.78647 0.78124 0.78546 1.19685 1.20738 1.18543 1.21736 0.93674 0.92352 1.50537 0.91905 1.19028 0.94532 0.93269 0.94741 1.21359 0.98041 0.92762 1.01054 1.21462 0.98347 0.93096 1.01867 1.22480 0.94291 0.82964 1.00789 1.87863 1.35363 1.14334 1.95560 1.22710 0.93110 0.84705 1.00615 1.22622 0.99314 0.92734 0.98974 1.23031 1.01471 0.97087 0.96273 1.22829 0.99719 0.95761 0.99040 1.22894 0.98734 0.94123 1.00478 0.92749 0.99190 0.99174 0.92484 0.92463 0.92632 0.92659 0.92508 0.92464 0.92668 0.92606 0.89513 0.90055 0.92263 0.89718 0.90267 0.90402 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.11 -4.05 5.58 30.59 0.17 -3.87 16 12 C 0.07 2.11 5.94 71.98 0.43 2.54 16 13 O -0.41 -12.37 10.34 -148.98 -1.54 -13.92 16 14 C 0.06 1.44 5.76 71.98 0.41 1.85 16 15 C -0.12 -2.28 4.00 -10.27 -0.04 -2.32 16 16 C -0.14 -2.54 7.65 31.18 0.24 -2.31 16 17 C -0.14 -1.85 8.09 31.18 0.25 -1.59 16 18 C -0.12 -1.72 7.65 31.12 0.24 -1.48 16 19 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 20 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 22 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 23 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.12 7.88 -2.39 -0.02 1.10 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -65.82 297.78 4.47 -61.35 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.00 Total: 4.90 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 2.70 Total: -41.09 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.54 Total: -13.92 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.82 4.47 -61.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719677484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.853 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds