Wall clock time and date at job start Mon Mar 30 2020 02:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99991 * 2 1 4 4 C 1.50697 * 115.56246 * 279.00207 * 3 2 1 5 5 O 1.21278 * 120.00280 * 169.82560 * 4 3 2 6 6 N 1.34775 * 119.99985 * 349.82141 * 4 3 2 7 7 C 1.46500 * 120.00365 * 175.05573 * 6 4 3 8 8 H 1.09009 * 109.46630 * 35.00160 * 7 6 4 9 9 C 1.53000 * 109.47162 * 275.00484 * 7 6 4 10 10 C 1.50699 * 109.47289 * 154.99578 * 7 6 4 11 11 H 1.07997 * 119.99980 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99753 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00164 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99643 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47290 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47371 * 120.00345 * 14 12 10 17 17 H 1.48501 * 109.47326 * 239.99959 * 14 12 10 18 18 C 1.53002 * 117.49861 * 64.68534 * 3 2 1 19 19 C 1.53001 * 59.99967 * 107.49230 * 18 3 2 20 20 H 1.09004 * 109.47515 * 298.00639 * 1 2 3 21 21 H 1.09006 * 109.47044 * 58.00979 * 1 2 3 22 22 H 1.08996 * 109.46999 * 178.00619 * 1 2 3 23 23 H 1.00899 * 110.99815 * 236.04638 * 2 1 3 24 24 H 0.97001 * 119.99848 * 355.05497 * 6 4 3 25 25 H 1.08992 * 109.47299 * 59.99795 * 9 7 6 26 26 H 1.09003 * 109.46745 * 180.02562 * 9 7 6 27 27 H 1.09005 * 109.46608 * 299.99347 * 9 7 6 28 28 H 0.97006 * 119.99887 * 179.97438 * 13 12 10 29 29 H 1.09000 * 117.49986 * 0.02562 * 18 3 2 30 30 H 1.09001 * 117.50245 * 214.97576 * 18 3 2 31 31 H 1.09002 * 117.50282 * 107.48713 * 19 18 3 32 32 H 1.09006 * 117.49995 * 252.49296 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 2.0299 2.0547 -1.3427 5 8 2.2721 3.2410 -1.4135 6 7 1.7917 1.3475 -2.4650 7 6 1.7178 2.0301 -3.7592 8 1 2.4265 2.8582 -3.7741 9 6 0.3012 2.5672 -3.9724 10 6 2.0577 1.0583 -4.8598 11 1 2.3036 0.0346 -4.6193 12 6 2.0536 1.4760 -6.1737 13 7 1.7536 2.7225 -6.4665 14 14 2.4741 0.2713 -7.5380 15 1 2.7718 -1.0590 -6.9492 16 1 1.3220 0.1542 -8.4676 17 1 3.6624 0.7610 -8.2819 18 6 1.7069 2.2389 1.2268 19 6 3.1177 1.6974 0.9876 20 1 -0.3634 0.4826 0.9073 21 1 -0.3633 0.5445 -0.8716 22 1 -0.3633 -1.0270 -0.0358 23 1 1.8306 -0.5261 -0.7814 24 1 1.6691 0.3865 -2.4159 25 1 0.0555 3.2701 -3.1764 26 1 0.2462 3.0747 -4.9355 27 1 -0.4074 1.7391 -3.9575 28 1 1.7511 3.0165 -7.3910 29 1 1.1268 1.7919 2.0341 30 1 1.5421 3.3038 1.0628 31 1 3.8810 2.4060 0.6660 32 1 3.4656 0.8944 1.6375 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720462610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:01 Heat of formation + Delta-G solvation = -13.213024 kcal Electronic energy + Delta-G solvation = -14483.356039 eV Core-core repulsion = 12058.637059 eV Total energy + Delta-G solvation = -2424.718980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67387 -36.70701 -34.97081 -33.12436 -32.11311 -29.01981 -25.53189 -25.29381 -23.19094 -22.21019 -20.44132 -19.02833 -17.83881 -16.15678 -15.46082 -14.97030 -14.67157 -14.39215 -14.01952 -13.53046 -13.12399 -12.74324 -12.45784 -11.86131 -11.66571 -11.29900 -11.14031 -11.01115 -10.82087 -10.65201 -10.38276 -10.28906 -10.03199 -9.57609 -9.08516 -8.60310 -8.30466 -7.95180 -6.16041 -4.25626 3.04935 3.21343 3.29130 3.31873 3.91341 4.00292 4.21621 4.33295 5.05376 5.16238 5.22489 5.26316 5.41269 5.65733 5.75849 5.77513 5.97602 6.02930 6.31756 6.74334 6.86166 6.89594 7.09060 7.22367 7.39292 7.52273 7.65364 7.86291 8.09951 8.59464 8.73687 9.04181 9.41999 10.90015 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044689 B = 0.008000 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.405516 B = 3498.966010 C = 3667.607298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.652 5.652 3 C -0.003 4.003 4 C 0.515 3.485 5 O -0.552 6.552 6 N -0.707 5.707 7 C 0.263 3.737 8 H 0.050 0.950 9 C -0.146 4.146 10 C -0.534 4.534 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.903 3.097 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.138 4.138 19 C -0.132 4.132 20 H 0.065 0.935 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.347 0.653 24 H 0.383 0.617 25 H 0.012 0.988 26 H 0.092 0.908 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -5.124 10.917 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.284 5.284 3 C -0.099 4.099 4 C 0.298 3.702 5 O -0.430 6.430 6 N -0.355 5.355 7 C 0.162 3.838 8 H 0.068 0.932 9 C -0.204 4.204 10 C -0.572 4.572 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.521 5.521 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.176 4.176 19 C -0.170 4.170 20 H 0.084 0.916 21 H 0.051 0.949 22 H 0.088 0.912 23 H 0.166 0.834 24 H 0.216 0.784 25 H 0.031 0.969 26 H 0.110 0.890 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.426 -4.216 11.324 12.168 hybrid contribution -0.138 -0.901 -1.793 2.011 sum -1.565 -5.116 9.532 10.931 Atomic orbital electron populations 1.22241 0.87209 1.01791 1.01312 1.60278 1.08224 1.10326 1.49592 1.21726 1.07111 0.90465 0.90572 1.20075 0.77428 0.87331 0.85355 1.90645 1.49830 1.15511 1.87038 1.46480 1.70196 1.10529 1.08322 1.18777 0.94363 0.93355 0.77318 0.93229 1.22080 0.97671 0.98656 1.02032 1.21233 1.48360 0.96656 0.90976 0.92061 1.24896 0.94726 0.95424 0.98681 1.69910 1.47547 1.15450 1.19149 0.86377 0.78110 0.80928 0.81594 1.19710 1.20843 1.20808 1.23000 0.99153 0.99344 0.96069 1.23046 0.91744 1.02581 0.99614 0.91624 0.94950 0.91187 0.83392 0.78377 0.96863 0.88985 0.95525 0.92576 0.88044 0.87699 0.88050 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.51 60.07 0.63 0.92 16 2 N -0.65 -8.80 6.78 -108.36 -0.73 -9.53 16 3 C 0.00 -0.05 2.26 -132.75 -0.30 -0.35 16 4 C 0.52 10.69 7.41 -10.99 -0.08 10.61 16 5 O -0.55 -13.58 16.06 5.56 0.09 -13.49 16 6 N -0.71 -15.08 5.02 -54.93 -0.28 -15.36 16 7 C 0.26 6.81 2.60 -69.08 -0.18 6.63 16 8 H 0.05 1.48 7.51 -51.92 -0.39 1.09 16 9 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 10 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 13 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 14 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.14 -1.90 9.41 -26.73 -0.25 -2.15 16 19 C -0.13 -1.81 10.08 -26.73 -0.27 -2.08 16 20 H 0.06 0.76 7.49 -51.93 -0.39 0.37 16 21 H 0.03 0.46 8.07 -51.93 -0.42 0.04 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.35 4.56 7.23 -39.29 -0.28 4.28 16 24 H 0.38 7.15 6.74 -40.82 -0.28 6.88 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.10 1.18 7.82 -51.93 -0.41 0.77 16 30 H 0.10 1.56 7.88 -51.93 -0.41 1.15 16 31 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -30.22 271.15 -6.27 -36.49 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.54 Total: 9.11 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.50 Total: -2.60 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.38 Total: -49.24 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.22 -6.27 -36.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720462610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds