Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46915 * 2 1 4 4 C 1.45752 * 117.94520 * 89.99934 * 3 2 1 5 5 C 1.52925 * 110.32049 * 199.15383 * 4 3 2 6 6 C 1.53266 * 108.71493 * 308.95081 * 5 4 3 7 7 C 1.53069 * 108.24899 * 67.81107 * 6 5 4 8 8 H 1.09003 * 109.39981 * 71.16577 * 7 6 5 9 9 N 1.46503 * 109.33248 * 190.94590 * 7 6 5 10 10 C 1.36936 * 120.00056 * 205.38867 * 9 7 6 11 11 H 1.07996 * 119.99888 * 359.97438 * 10 9 7 12 12 C 1.38808 * 119.99998 * 180.02562 * 10 9 7 13 13 N 1.31622 * 120.00007 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00214 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46877 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47134 * 119.99938 * 14 12 10 17 17 H 1.48497 * 109.47068 * 240.00013 * 14 12 10 18 18 C 1.33349 * 117.94783 * 269.97856 * 3 2 1 19 19 O 1.21286 * 118.24677 * 357.77826 * 18 3 2 20 20 H 1.09002 * 109.47002 * 60.00188 * 1 2 3 21 21 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47477 * 299.99757 * 1 2 3 23 23 H 1.09001 * 109.47276 * 239.99947 * 2 1 3 24 24 H 1.08998 * 109.47487 * 119.99872 * 2 1 3 25 25 H 1.09002 * 109.30196 * 319.36523 * 4 3 2 26 26 H 1.08998 * 109.29923 * 78.94655 * 4 3 2 27 27 H 1.09004 * 109.60143 * 68.89990 * 5 4 3 28 28 H 1.09000 * 109.60431 * 189.38543 * 5 4 3 29 29 H 1.09008 * 109.81606 * 308.10590 * 6 5 4 30 30 H 1.08997 * 109.73811 * 187.48191 * 6 5 4 31 31 H 0.97002 * 119.99689 * 25.38974 * 9 7 6 32 32 H 0.97000 * 120.00195 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0253 1.2876 5 6 2.2841 3.5450 1.1219 6 6 3.2674 3.8927 -0.0013 7 6 2.6796 3.3948 -1.3240 8 1 1.8293 4.0184 -1.6000 9 7 3.7021 3.4758 -2.3701 10 6 3.3308 3.5962 -3.6826 11 1 2.2843 3.6311 -3.9467 12 6 4.2997 3.6724 -4.6738 13 7 5.5752 3.6284 -4.3520 14 14 3.7932 3.8375 -6.4642 15 1 2.3115 3.8633 -6.5591 16 1 4.3474 5.0975 -7.0213 17 1 4.3181 2.6823 -7.2356 18 6 2.2270 1.9704 -1.1780 19 8 2.0417 1.3209 -2.1854 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.4407 1.7575 1.9717 26 1 3.1960 1.6836 1.6982 27 1 1.2893 3.9101 0.8665 28 1 2.6179 4.0060 2.0515 29 1 4.2248 3.4047 0.1816 30 1 3.4085 4.9726 -0.0458 31 1 4.6422 3.4441 -2.1329 32 1 6.2522 3.6821 -5.0446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722352509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -25.111966 kcal Electronic energy + Delta-G solvation = -14675.816415 eV Core-core repulsion = 12250.581458 eV Total energy + Delta-G solvation = -2425.234957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86776 -35.82198 -35.32526 -33.03753 -30.84104 -29.52070 -27.70971 -24.30388 -23.60952 -22.00285 -21.32518 -18.28711 -17.00750 -16.20515 -15.89069 -15.27434 -14.30915 -14.02544 -13.74768 -13.44529 -13.34807 -12.91223 -12.74125 -12.15551 -11.77690 -11.52352 -11.20103 -10.94437 -10.81586 -10.78435 -10.67748 -10.33409 -9.95243 -9.70077 -9.28948 -8.62087 -8.19072 -6.98523 -5.71874 -3.00547 3.44420 3.53299 3.55410 3.56454 3.60031 4.65177 4.97732 5.02316 5.07728 5.27304 5.43468 5.45583 5.56476 5.62866 5.68963 5.74873 5.87313 5.90882 6.05525 6.13149 6.20405 6.24873 6.35959 6.50454 6.68134 6.99921 7.81866 8.09480 8.44211 9.06476 9.56822 10.03484 10.40167 11.50683 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.009158 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.966370 B = 3056.761371 C = 3506.146120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.618 5.618 4 C 0.120 3.880 5 C -0.130 4.130 6 C -0.127 4.127 7 C 0.169 3.831 8 H 0.079 0.921 9 N -0.697 5.697 10 C -0.224 4.224 11 H 0.074 0.926 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 0.911 3.089 15 H -0.279 1.279 16 H -0.292 1.292 17 H -0.292 1.292 18 C 0.482 3.518 19 O -0.529 6.529 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.387 0.613 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -2.268 14.072 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.355 5.355 4 C -0.003 4.003 5 C -0.169 4.169 6 C -0.165 4.165 7 C 0.054 3.946 8 H 0.097 0.903 9 N -0.337 5.337 10 C -0.355 4.355 11 H 0.091 0.909 12 C -0.209 4.209 13 N -0.584 5.584 14 Si 0.742 3.258 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.219 1.219 18 C 0.268 3.732 19 O -0.403 6.403 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.222 0.778 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.540 -2.540 13.291 15.491 hybrid contribution 0.118 -0.189 -0.796 0.826 sum -7.423 -2.729 12.496 14.788 Atomic orbital electron populations 1.22069 0.96571 1.01457 1.01947 1.21326 0.93978 0.84473 1.02501 1.47868 1.67530 1.13879 1.06253 1.21242 1.00448 0.93317 0.85301 1.21817 1.00760 0.94619 0.99679 1.21923 0.98759 1.02095 0.93765 1.20214 0.94567 0.89976 0.89850 0.90319 1.42349 1.03596 1.85544 1.02178 1.19290 0.92631 1.40918 0.82702 0.90853 1.24748 0.95205 1.02813 0.98136 1.69673 0.98823 1.57816 1.32096 0.86051 0.77666 0.77023 0.85089 1.20440 1.21931 1.21881 1.22785 0.76085 0.92397 0.81946 1.90643 1.49772 1.64106 1.35755 0.92274 0.92290 0.93117 0.89914 0.91719 0.91702 0.92611 0.91147 0.90365 0.91387 0.90622 0.77818 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.23 37.16 0.38 -1.69 16 2 C 0.10 1.47 5.94 -4.04 -0.02 1.45 16 3 N -0.62 -10.10 2.81 -174.96 -0.49 -10.59 16 4 C 0.12 1.45 6.33 -4.48 -0.03 1.42 16 5 C -0.13 -1.51 6.00 -26.63 -0.16 -1.67 16 6 C -0.13 -1.98 5.51 -26.56 -0.15 -2.12 16 7 C 0.17 3.51 3.00 -69.30 -0.21 3.31 16 8 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 9 N -0.70 -18.32 5.00 -54.77 -0.27 -18.59 16 10 C -0.22 -6.60 9.31 -15.06 -0.14 -6.74 16 11 H 0.07 2.17 7.83 -52.49 -0.41 1.75 16 12 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 13 N -0.94 -29.17 13.06 55.49 0.72 -28.44 16 14 Si 0.91 23.66 29.55 -169.99 -5.02 18.64 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 18 C 0.48 10.25 7.19 -11.88 -0.09 10.17 16 19 O -0.53 -13.78 15.34 5.55 0.09 -13.70 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.44 7.13 -51.93 -0.37 1.07 16 24 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 25 H 0.06 0.63 8.10 -51.93 -0.42 0.20 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.09 8.10 -51.92 -0.42 0.67 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.39 10.61 7.78 -40.82 -0.32 10.30 16 32 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 266.40 15.07 4.01 4.01 Total: -1.00 -34.47 266.40 -6.34 -40.81 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.87 Total: 4.25 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.51 Total: 3.60 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.04 Total: -57.63 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.47 -6.34 -40.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722352509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.703 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds