Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46915 * 2 1 4 4 C 1.45752 * 117.94520 * 89.99934 * 3 2 1 5 5 C 1.52925 * 110.32049 * 199.15383 * 4 3 2 6 6 C 1.53266 * 108.71493 * 308.95081 * 5 4 3 7 7 C 1.53069 * 108.24899 * 67.81107 * 6 5 4 8 8 H 1.09003 * 109.39981 * 71.16577 * 7 6 5 9 9 N 1.46503 * 109.33248 * 190.94590 * 7 6 5 10 10 C 1.36936 * 120.00056 * 205.38867 * 9 7 6 11 11 H 1.07996 * 119.99888 * 359.97438 * 10 9 7 12 12 C 1.38808 * 119.99998 * 180.02562 * 10 9 7 13 13 N 1.31622 * 120.00007 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00214 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46877 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47134 * 119.99938 * 14 12 10 17 17 H 1.48497 * 109.47068 * 240.00013 * 14 12 10 18 18 C 1.33349 * 117.94783 * 269.97856 * 3 2 1 19 19 O 1.21286 * 118.24677 * 357.77826 * 18 3 2 20 20 H 1.09002 * 109.47002 * 60.00188 * 1 2 3 21 21 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47477 * 299.99757 * 1 2 3 23 23 H 1.09001 * 109.47276 * 239.99947 * 2 1 3 24 24 H 1.08998 * 109.47487 * 119.99872 * 2 1 3 25 25 H 1.09002 * 109.30196 * 319.36523 * 4 3 2 26 26 H 1.08998 * 109.29923 * 78.94655 * 4 3 2 27 27 H 1.09004 * 109.60143 * 68.89990 * 5 4 3 28 28 H 1.09000 * 109.60431 * 189.38543 * 5 4 3 29 29 H 1.09008 * 109.81606 * 308.10590 * 6 5 4 30 30 H 1.08997 * 109.73811 * 187.48191 * 6 5 4 31 31 H 0.97002 * 119.99689 * 25.38974 * 9 7 6 32 32 H 0.97000 * 120.00195 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2459 2.0253 1.2876 5 6 2.2841 3.5450 1.1219 6 6 3.2674 3.8927 -0.0013 7 6 2.6796 3.3948 -1.3240 8 1 1.8293 4.0184 -1.6000 9 7 3.7021 3.4758 -2.3701 10 6 3.3308 3.5962 -3.6826 11 1 2.2843 3.6311 -3.9467 12 6 4.2997 3.6724 -4.6738 13 7 5.5752 3.6284 -4.3520 14 14 3.7932 3.8375 -6.4642 15 1 2.3115 3.8633 -6.5591 16 1 4.3474 5.0975 -7.0213 17 1 4.3181 2.6823 -7.2356 18 6 2.2270 1.9704 -1.1780 19 8 2.0417 1.3209 -2.1854 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.4407 1.7575 1.9717 26 1 3.1960 1.6836 1.6982 27 1 1.2893 3.9101 0.8665 28 1 2.6179 4.0060 2.0515 29 1 4.2248 3.4047 0.1816 30 1 3.4085 4.9726 -0.0458 31 1 4.6422 3.4441 -2.1329 32 1 6.2522 3.6821 -5.0446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722352509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -50.315300 kcal Electronic energy + Delta-G solvation = -14676.909313 eV Core-core repulsion = 12250.581458 eV Total energy + Delta-G solvation = -2426.327855 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.36055 -37.32048 -37.00285 -34.75932 -32.64595 -30.80020 -29.33121 -25.99688 -25.14587 -23.54549 -22.57746 -19.81291 -18.99406 -17.60151 -17.40521 -16.94349 -16.05210 -15.57213 -15.27044 -15.02559 -14.59984 -14.48626 -14.14899 -13.37700 -13.22552 -12.91888 -12.87243 -12.69288 -12.32908 -12.17075 -12.03960 -11.93998 -11.82181 -11.54265 -11.30976 -10.46788 -9.53575 -9.09806 -7.99162 -5.27948 1.40897 1.44246 1.54164 1.86674 2.22504 2.54167 3.36047 3.76361 3.89207 3.94944 4.01533 4.26545 4.27434 4.36401 4.52226 4.56502 4.67523 4.73769 4.92025 4.97041 5.07242 5.14014 5.21781 5.28981 5.40548 5.48685 5.75004 6.20083 6.66942 7.28953 7.46979 7.94227 8.20146 9.24036 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.009158 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.966370 B = 3056.761371 C = 3506.146120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 N -0.609 5.609 4 C 0.109 3.891 5 C -0.121 4.121 6 C -0.118 4.118 7 C 0.159 3.841 8 H 0.072 0.928 9 N -0.713 5.713 10 C -0.226 4.226 11 H 0.063 0.937 12 C -0.075 4.075 13 N -0.969 5.969 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.296 1.296 18 C 0.479 3.521 19 O -0.593 6.593 20 H 0.024 0.976 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.378 0.622 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -2.254 16.699 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 N -0.343 5.343 4 C -0.013 4.013 5 C -0.159 4.159 6 C -0.156 4.156 7 C 0.046 3.954 8 H 0.090 0.910 9 N -0.352 5.352 10 C -0.357 4.357 11 H 0.081 0.919 12 C -0.267 4.267 13 N -0.619 5.619 14 Si 0.801 3.199 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.223 1.223 18 C 0.265 3.735 19 O -0.472 6.472 20 H 0.043 0.957 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.211 0.789 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.671 -2.524 16.020 18.390 hybrid contribution 0.383 -0.242 -1.451 1.520 sum -8.288 -2.766 14.569 16.988 Atomic orbital electron populations 1.21995 0.94884 1.02813 1.01447 1.21524 0.95365 0.83240 1.02638 1.47819 1.65436 1.14602 1.06453 1.21696 1.02935 0.93301 0.83318 1.21847 0.99797 0.94648 0.99599 1.21866 0.99341 1.02240 0.92169 1.20521 0.93598 0.90076 0.91209 0.90982 1.42436 1.04196 1.86168 1.02389 1.19481 0.92124 1.39588 0.84553 0.91857 1.25533 0.95363 1.03714 1.02102 1.69802 0.99571 1.59586 1.32988 0.85091 0.77569 0.76944 0.80280 1.19731 1.20841 1.22313 1.22492 0.75953 0.92253 0.82783 1.90614 1.52857 1.65438 1.38279 0.95718 0.90133 0.90478 0.93694 0.87588 0.87698 0.90922 0.90661 0.86162 0.91904 0.89944 0.78944 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 10.23 71.98 0.74 -2.83 16 2 C 0.10 2.60 5.94 86.38 0.51 3.12 16 3 N -0.61 -18.71 2.81 -826.64 -2.32 -21.03 16 4 C 0.11 2.11 6.33 86.50 0.55 2.66 16 5 C -0.12 -2.29 6.00 30.66 0.18 -2.11 16 6 C -0.12 -3.46 5.51 30.71 0.17 -3.29 16 7 C 0.16 6.68 3.00 44.10 0.13 6.81 16 8 H 0.07 3.07 8.08 -2.39 -0.02 3.05 16 9 N -0.71 -38.63 5.00 -327.18 -1.63 -40.27 16 10 C -0.23 -13.70 9.31 84.03 0.78 -12.92 16 11 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 12 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 13 N -0.97 -62.02 13.06 21.65 0.28 -61.73 16 14 Si 0.97 49.81 29.55 68.60 2.03 51.84 16 15 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 16 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 17 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 18 C 0.48 20.56 7.19 87.71 0.63 21.19 16 19 O -0.59 -32.21 15.34 -3.05 -0.05 -32.26 16 20 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.58 7.13 -2.39 -0.02 1.57 16 24 H 0.11 2.05 8.01 -2.39 -0.02 2.03 16 25 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.92 8.10 -2.38 -0.02 1.90 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.38 21.43 7.78 -92.71 -0.72 20.71 16 32 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -79.20 266.40 2.84 -76.36 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.38 Total: 18.63 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.16 Total: 8.46 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -3.67 Total: -123.04 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.26 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.03 Total: 51.84 kcal Total: -79.20 2.84 -76.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722352509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.044 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds