Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99329 * 2 1 4 4 C 1.34776 * 120.00525 * 179.97438 * 2 1 3 5 5 O 1.21274 * 120.00010 * 0.02562 * 4 2 1 6 6 C 1.50696 * 119.99838 * 179.97438 * 4 2 1 7 7 H 1.09001 * 110.64129 * 56.86102 * 6 4 2 8 8 C 1.55160 * 110.72060 * 179.97438 * 6 4 2 9 9 C 1.54906 * 101.58477 * 153.86510 * 8 6 4 10 10 N 1.47421 * 104.83194 * 322.99632 * 9 8 6 11 11 C 1.36938 * 125.64902 * 204.09053 * 10 9 8 12 12 H 1.08001 * 120.00413 * 163.18599 * 11 10 9 13 13 C 1.38817 * 119.99907 * 343.18757 * 11 10 9 14 14 N 1.31620 * 119.99629 * 331.96625 * 13 11 10 15 15 Si 1.86798 * 119.99924 * 151.96856 * 13 11 10 16 16 H 1.48503 * 109.46918 * 269.99738 * 15 13 11 17 17 H 1.48497 * 109.47281 * 29.99846 * 15 13 11 18 18 H 1.48501 * 109.47032 * 150.00113 * 15 13 11 19 19 C 1.47026 * 108.70638 * 24.35227 * 10 9 8 20 20 H 1.09003 * 109.47119 * 239.99696 * 1 2 3 21 21 H 1.08996 * 109.47503 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46871 * 120.00558 * 1 2 3 23 23 H 1.09001 * 109.46851 * 269.99716 * 3 2 1 24 24 H 1.09000 * 109.47561 * 29.99908 * 3 2 1 25 25 H 1.09001 * 109.46678 * 150.00186 * 3 2 1 26 26 H 1.09001 * 111.00318 * 35.79346 * 8 6 4 27 27 H 1.09002 * 111.00568 * 271.94738 * 8 6 4 28 28 H 1.08993 * 110.37109 * 204.15515 * 9 8 6 29 29 H 1.09001 * 110.36213 * 81.82969 * 9 8 6 30 30 H 0.96995 * 120.00466 * 353.96430 * 14 13 11 31 31 H 1.08995 * 109.88283 * 118.12954 * 19 10 9 32 32 H 1.08996 * 109.88163 * 239.29792 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2174 0.0005 6 6 3.6459 -1.1669 -0.0001 7 1 4.0304 -0.6087 0.8535 8 6 4.1951 -2.6181 0.0013 9 6 5.5791 -2.4276 -0.6678 10 7 5.3599 -1.4006 -1.7024 11 6 6.1192 -1.2276 -2.8288 12 1 5.7375 -0.6432 -3.6529 13 6 7.3796 -1.8033 -2.9113 14 7 8.0760 -2.0224 -1.8161 15 14 8.0874 -2.2671 -4.5767 16 1 7.7010 -3.6623 -4.9075 17 1 7.5559 -1.3470 -5.6140 18 1 9.5679 -2.1608 -4.5323 19 6 4.1947 -0.5888 -1.3216 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5140 -0.8900 23 1 2.3790 1.5835 -1.0277 24 1 1.6082 2.0285 0.5138 25 1 3.1498 1.1386 0.5138 26 1 3.5611 -3.2763 -0.5928 27 1 4.3014 -2.9947 1.0187 28 1 5.9117 -3.3602 -1.1235 29 1 6.3092 -2.0800 0.0631 30 1 7.7482 -1.7031 -0.9609 31 1 4.4968 0.4485 -1.1775 32 1 3.4308 -0.6503 -2.0965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885397279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = -10.213073 kcal Electronic energy + Delta-G solvation = -14608.744315 eV Core-core repulsion = 12184.155423 eV Total energy + Delta-G solvation = -2424.588892 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92780 -37.01381 -35.43784 -32.81056 -29.59002 -28.90997 -27.39375 -25.88213 -24.33802 -21.29529 -20.22966 -18.77421 -17.49230 -16.89237 -15.95405 -15.54827 -14.52044 -14.27764 -13.69912 -13.15663 -12.96118 -12.83546 -12.71151 -12.62026 -12.30698 -11.92202 -11.59010 -10.75119 -10.66523 -10.57523 -10.46967 -10.10684 -10.01143 -9.54275 -9.51109 -8.64229 -8.38841 -6.94330 -6.09201 -3.14237 2.83579 3.11117 3.52821 3.56051 3.71716 4.56643 4.73213 5.05693 5.11335 5.19783 5.29207 5.31210 5.42954 5.52833 5.67272 5.70821 5.72983 5.79620 6.13751 6.27147 6.43916 6.46579 6.51460 6.71518 7.00695 7.10491 7.41626 7.79871 8.34418 8.49422 9.02434 9.81833 10.36985 11.23480 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052472 B = 0.007812 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.487543 B = 3583.167147 C = 3743.629478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.627 5.627 3 C 0.078 3.922 4 C 0.528 3.472 5 O -0.540 6.540 6 C -0.124 4.124 7 H 0.096 0.904 8 C -0.115 4.115 9 C 0.142 3.858 10 N -0.602 5.602 11 C -0.338 4.338 12 H 0.065 0.935 13 C -0.024 4.024 14 N -0.916 5.916 15 Si 1.068 2.932 16 H -0.293 1.293 17 H -0.292 1.292 18 H -0.290 1.290 19 C 0.154 3.846 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.030 0.970 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 6.114 4.873 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.361 5.361 3 C -0.065 4.065 4 C 0.317 3.683 5 O -0.416 6.416 6 C -0.145 4.145 7 H 0.114 0.886 8 C -0.154 4.154 9 C 0.017 3.983 10 N -0.330 5.330 11 C -0.466 4.466 12 H 0.083 0.917 13 C -0.226 4.226 14 N -0.557 5.557 15 Si 0.897 3.103 16 H -0.220 1.220 17 H -0.219 1.219 18 H -0.216 1.216 19 C 0.027 3.973 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.232 4.862 4.010 12.017 hybrid contribution -1.365 1.028 0.784 1.880 sum -11.597 5.891 4.795 13.862 Atomic orbital electron populations 1.21561 0.79654 1.01817 1.02115 1.47798 1.06781 1.06727 1.74829 1.21911 0.97412 0.84785 1.02358 1.20694 0.90188 0.82730 0.74712 1.90643 1.70448 1.31137 1.49381 1.22376 0.90299 1.00859 1.01013 0.88573 1.22744 0.98214 0.93658 1.00802 1.21596 0.92539 0.93282 0.90900 1.44551 1.31900 1.32208 1.24295 1.19768 0.98396 1.36544 0.91891 0.91713 1.25760 0.92060 1.00018 1.04748 1.70745 1.37073 1.47880 1.00012 0.83481 0.75749 0.76484 0.74539 1.22008 1.21882 1.21597 1.21174 0.90799 0.94096 0.91193 0.92427 0.90965 0.92331 0.92186 0.91341 0.90537 0.90407 0.91554 0.92747 0.95447 0.91934 0.95258 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.16 59.85 0.61 1.63 16 2 N -0.63 -8.68 3.27 -189.51 -0.62 -9.30 16 3 C 0.08 0.84 9.12 59.85 0.55 1.39 16 4 C 0.53 9.33 6.91 -10.99 -0.08 9.25 16 5 O -0.54 -11.18 15.70 5.56 0.09 -11.10 16 6 C -0.12 -2.25 2.36 -89.93 -0.21 -2.47 16 7 H 0.10 1.54 7.27 -51.93 -0.38 1.16 16 8 C -0.12 -2.32 6.18 -24.58 -0.15 -2.47 16 9 C 0.14 3.43 5.30 -2.53 -0.01 3.42 16 10 N -0.60 -15.71 3.29 -170.07 -0.56 -16.27 16 11 C -0.34 -9.75 10.02 -15.06 -0.15 -9.90 16 12 H 0.07 1.86 7.97 -52.49 -0.42 1.44 16 13 C -0.02 -0.70 5.09 -17.43 -0.09 -0.78 16 14 N -0.92 -27.92 12.93 55.49 0.72 -27.20 16 15 Si 1.07 25.78 30.00 -169.99 -5.10 20.68 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.15 3.25 5.78 -3.06 -0.02 3.23 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 22 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 23 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 24 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 25 H 0.08 0.84 6.06 -51.93 -0.31 0.52 16 26 H 0.08 1.67 7.40 -51.93 -0.38 1.29 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.43 7.95 -51.93 -0.41 1.02 16 29 H 0.03 0.68 6.81 -51.93 -0.35 0.33 16 30 H 0.27 8.18 6.06 -40.82 -0.25 7.93 16 31 H 0.03 0.59 7.51 -51.93 -0.39 0.20 16 32 H 0.02 0.54 7.81 -51.93 -0.41 0.13 16 LS Contribution 260.53 15.07 3.93 3.93 Total: -1.00 -33.86 260.53 -5.71 -39.57 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.60 Total: -3.61 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 0.44 Total: 3.30 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.46 Total: -52.77 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.10 Total: 20.68 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.86 -5.71 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885397279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.357 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds