Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99329 * 2 1 4 4 C 1.34776 * 120.00525 * 179.97438 * 2 1 3 5 5 O 1.21274 * 120.00010 * 0.02562 * 4 2 1 6 6 C 1.50696 * 119.99838 * 179.97438 * 4 2 1 7 7 H 1.09001 * 110.64129 * 56.86102 * 6 4 2 8 8 C 1.55160 * 110.72060 * 179.97438 * 6 4 2 9 9 C 1.54906 * 101.58477 * 153.86510 * 8 6 4 10 10 N 1.47421 * 104.83194 * 322.99632 * 9 8 6 11 11 C 1.36938 * 125.64902 * 204.09053 * 10 9 8 12 12 H 1.08001 * 120.00413 * 163.18599 * 11 10 9 13 13 C 1.38817 * 119.99907 * 343.18757 * 11 10 9 14 14 N 1.31620 * 119.99629 * 331.96625 * 13 11 10 15 15 Si 1.86798 * 119.99924 * 151.96856 * 13 11 10 16 16 H 1.48503 * 109.46918 * 269.99738 * 15 13 11 17 17 H 1.48497 * 109.47281 * 29.99846 * 15 13 11 18 18 H 1.48501 * 109.47032 * 150.00113 * 15 13 11 19 19 C 1.47026 * 108.70638 * 24.35227 * 10 9 8 20 20 H 1.09003 * 109.47119 * 239.99696 * 1 2 3 21 21 H 1.08996 * 109.47503 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.46871 * 120.00558 * 1 2 3 23 23 H 1.09001 * 109.46851 * 269.99716 * 3 2 1 24 24 H 1.09000 * 109.47561 * 29.99908 * 3 2 1 25 25 H 1.09001 * 109.46678 * 150.00186 * 3 2 1 26 26 H 1.09001 * 111.00318 * 35.79346 * 8 6 4 27 27 H 1.09002 * 111.00568 * 271.94738 * 8 6 4 28 28 H 1.08993 * 110.37109 * 204.15515 * 9 8 6 29 29 H 1.09001 * 110.36213 * 81.82969 * 9 8 6 30 30 H 0.96995 * 120.00466 * 353.96430 * 14 13 11 31 31 H 1.08995 * 109.88283 * 118.12954 * 19 10 9 32 32 H 1.08996 * 109.88163 * 239.29792 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2174 0.0005 6 6 3.6459 -1.1669 -0.0001 7 1 4.0304 -0.6087 0.8535 8 6 4.1951 -2.6181 0.0013 9 6 5.5791 -2.4276 -0.6678 10 7 5.3599 -1.4006 -1.7024 11 6 6.1192 -1.2276 -2.8288 12 1 5.7375 -0.6432 -3.6529 13 6 7.3796 -1.8033 -2.9113 14 7 8.0760 -2.0224 -1.8161 15 14 8.0874 -2.2671 -4.5767 16 1 7.7010 -3.6623 -4.9075 17 1 7.5559 -1.3470 -5.6140 18 1 9.5679 -2.1608 -4.5323 19 6 4.1947 -0.5888 -1.3216 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5140 -0.8900 23 1 2.3790 1.5835 -1.0277 24 1 1.6082 2.0285 0.5138 25 1 3.1498 1.1386 0.5138 26 1 3.5611 -3.2763 -0.5928 27 1 4.3014 -2.9947 1.0187 28 1 5.9117 -3.3602 -1.1235 29 1 6.3092 -2.0800 0.0631 30 1 7.7482 -1.7031 -0.9609 31 1 4.4968 0.4485 -1.1775 32 1 3.4308 -0.6503 -2.0965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885397279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = -33.641723 kcal Electronic energy + Delta-G solvation = -14609.760258 eV Core-core repulsion = 12184.155423 eV Total energy + Delta-G solvation = -2425.604835 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31439 -38.76223 -36.64251 -34.81708 -31.44506 -30.48562 -28.51977 -27.17014 -26.28600 -22.83797 -22.16350 -20.13928 -19.53785 -18.23084 -17.26030 -16.87291 -16.15710 -15.93541 -15.52266 -15.11760 -14.36830 -14.28626 -14.10421 -13.58866 -13.48052 -13.30372 -12.85830 -12.61110 -12.50533 -12.40296 -12.20455 -11.88057 -11.80228 -11.60577 -10.98801 -10.51416 -9.74395 -9.06443 -8.35199 -5.37390 1.46735 1.57656 1.65242 1.83040 2.00312 2.62308 3.15680 3.31138 3.53746 3.70935 3.89064 4.08567 4.31661 4.37309 4.43567 4.47366 4.50219 4.72598 4.74905 4.86270 4.88341 4.93295 5.01016 5.02960 5.26488 5.50111 5.63712 6.23319 6.29187 6.86381 7.04980 7.66066 8.24573 8.97317 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052472 B = 0.007812 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.487543 B = 3583.167147 C = 3743.629478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.619 5.619 3 C 0.070 3.930 4 C 0.524 3.476 5 O -0.579 6.579 6 C -0.111 4.111 7 H 0.125 0.875 8 C -0.104 4.104 9 C 0.147 3.853 10 N -0.627 5.627 11 C -0.351 4.351 12 H 0.061 0.939 13 C -0.074 4.074 14 N -0.942 5.942 15 Si 1.117 2.883 16 H -0.288 1.288 17 H -0.270 1.270 18 H -0.289 1.289 19 C 0.156 3.844 20 H 0.057 0.943 21 H 0.113 0.887 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.046 0.954 32 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 7.593 5.113 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.351 5.351 3 C -0.072 4.072 4 C 0.313 3.687 5 O -0.459 6.459 6 C -0.132 4.132 7 H 0.143 0.857 8 C -0.143 4.143 9 C 0.022 3.978 10 N -0.355 5.355 11 C -0.479 4.479 12 H 0.079 0.921 13 C -0.271 4.271 14 N -0.585 5.585 15 Si 0.941 3.059 16 H -0.215 1.215 17 H -0.195 1.195 18 H -0.216 1.216 19 C 0.030 3.970 20 H 0.076 0.924 21 H 0.131 0.869 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -11.407 6.403 4.259 13.757 hybrid contribution -1.085 0.644 0.729 1.457 sum -12.491 7.046 4.988 15.184 Atomic orbital electron populations 1.21780 0.77870 1.04343 1.01558 1.47894 1.08072 1.06552 1.72619 1.22172 0.97969 0.84104 1.02934 1.20514 0.89758 0.83449 0.75011 1.90631 1.70864 1.32742 1.51618 1.22270 0.91272 0.99288 1.00401 0.85708 1.22591 0.95258 0.95028 1.01439 1.21484 0.94639 0.91340 0.90345 1.44822 1.32619 1.33732 1.24296 1.20025 0.98705 1.36279 0.92921 0.92141 1.27151 0.92824 0.99899 1.07217 1.70856 1.37866 1.49583 1.00168 0.82827 0.75078 0.76726 0.71219 1.21472 1.19524 1.21575 1.21236 0.88876 0.94416 0.92426 0.92428 0.86886 0.93523 0.92250 0.87473 0.90593 0.92141 0.88840 0.96201 0.96235 0.93150 0.93605 0.96681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.69 10.16 127.77 1.30 2.99 16 2 N -0.62 -15.40 3.27 -871.88 -2.85 -18.25 16 3 C 0.07 1.25 9.12 127.77 1.17 2.41 16 4 C 0.52 17.64 6.91 87.66 0.61 18.25 16 5 O -0.58 -23.56 15.70 -3.01 -0.05 -23.61 16 6 C -0.11 -3.86 2.36 -10.35 -0.02 -3.88 16 7 H 0.13 3.63 7.27 -2.39 -0.02 3.61 16 8 C -0.10 -4.15 6.18 31.99 0.20 -3.95 16 9 C 0.15 7.24 5.30 86.85 0.46 7.70 16 10 N -0.63 -32.97 3.29 -691.99 -2.28 -35.25 16 11 C -0.35 -20.39 10.02 84.03 0.84 -19.54 16 12 H 0.06 3.48 7.97 -2.91 -0.02 3.45 16 13 C -0.07 -4.35 5.09 84.86 0.43 -3.92 16 14 N -0.94 -58.42 12.93 21.65 0.28 -58.14 16 15 Si 1.12 52.10 30.00 68.60 2.06 54.16 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 C 0.16 6.44 5.78 86.73 0.50 6.94 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.11 1.28 7.79 -2.39 -0.02 1.26 16 22 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 1.10 8.10 -2.39 -0.02 1.09 16 24 H 0.11 1.13 7.92 -2.39 -0.02 1.11 16 25 H 0.08 1.39 6.06 -2.39 -0.01 1.37 16 26 H 0.06 2.62 7.40 -2.39 -0.02 2.60 16 27 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.02 1.08 7.95 -2.39 -0.02 1.06 16 29 H 0.02 1.00 6.81 -2.39 -0.02 0.98 16 30 H 0.26 16.08 6.06 -92.71 -0.56 15.51 16 31 H 0.05 1.76 7.51 -2.39 -0.02 1.74 16 32 H 0.02 0.66 7.81 -2.39 -0.02 0.64 16 Total: -1.00 -74.18 260.53 3.94 -70.24 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.30 Total: 3.85 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.48 Total: 6.99 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.85 Total: -111.64 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.61 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.06 Total: 54.16 kcal Total: -74.18 3.94 -70.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885397279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.603 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds