Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47245 * 2 1 4 4 C 1.46907 * 111.00181 * 297.10075 * 3 2 1 5 5 C 1.50697 * 109.47100 * 288.65229 * 4 3 2 6 6 H 1.08003 * 119.99738 * 1.22505 * 5 4 3 7 7 C 1.37879 * 119.99778 * 181.23528 * 5 4 3 8 8 N 1.31516 * 119.99724 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00096 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47058 * 90.00498 * 9 7 5 11 11 H 1.48500 * 109.47006 * 210.00745 * 9 7 5 12 12 H 1.48505 * 109.46977 * 330.00382 * 9 7 5 13 13 C 1.46900 * 111.00335 * 61.05706 * 3 2 1 14 14 C 1.50702 * 109.47047 * 66.04255 * 13 3 2 15 15 N 1.27645 * 125.76765 * 359.97438 * 14 13 3 16 16 O 1.41381 * 113.16701 * 180.30118 * 15 14 13 17 17 C 1.44246 * 107.50789 * 342.62708 * 16 15 14 18 18 C 1.51680 * 125.76915 * 179.97438 * 14 13 3 19 19 H 1.08998 * 109.47176 * 178.77024 * 1 2 3 20 20 H 1.08997 * 109.47167 * 298.77544 * 1 2 3 21 21 H 1.09007 * 109.46501 * 58.77439 * 1 2 3 22 22 H 1.08998 * 109.47557 * 239.99771 * 2 1 3 23 23 H 1.09004 * 109.47152 * 119.99948 * 2 1 3 24 24 H 1.09000 * 109.46645 * 48.64654 * 4 3 2 25 25 H 1.08999 * 109.46845 * 168.64527 * 4 3 2 26 26 H 0.97002 * 119.99918 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.46653 * 306.04868 * 13 3 2 28 28 H 1.08993 * 109.47535 * 186.04824 * 13 3 2 29 29 H 1.09004 * 111.01124 * 143.17932 * 17 16 15 30 30 H 1.09002 * 111.01145 * 267.04283 * 17 16 15 31 31 H 1.09010 * 110.80484 * 77.05639 * 18 14 13 32 32 H 1.08999 * 110.80600 * 313.55377 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6062 2.0896 -1.2209 5 6 2.3832 1.5558 -2.3966 6 1 3.0972 0.7580 -2.2546 7 6 2.1829 2.0862 -3.6534 8 7 2.8607 1.6201 -4.6795 9 14 0.9477 3.4659 -3.8989 10 1 1.6271 4.7750 -3.7264 11 1 0.3764 3.3812 -5.2670 12 1 -0.1423 3.3382 -2.8985 13 6 1.5695 2.1026 1.2001 14 6 2.2129 1.4947 2.4198 15 7 3.0241 0.5092 2.4226 16 8 3.4612 0.1523 3.7189 17 6 3.1776 1.2635 4.5938 18 6 2.0061 1.9507 3.8516 19 1 -0.3633 -1.0274 -0.0221 20 1 -0.3633 0.4947 0.9007 21 1 -0.3632 0.5328 -0.8789 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 0.5406 1.9321 -1.3880 25 1 1.8027 3.1559 -1.1092 26 1 2.7194 1.9930 -5.5638 27 1 0.4855 2.0251 1.2845 28 1 1.8539 3.1520 1.1241 29 1 2.8658 0.9158 5.5787 30 1 4.0369 1.9298 4.6704 31 1 1.0470 1.6016 4.2344 32 1 2.0828 3.0353 3.9274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167558110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = 34.023409 kcal Electronic energy + Delta-G solvation = -14363.625409 eV Core-core repulsion = 11940.954755 eV Total energy + Delta-G solvation = -2422.670654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95005 -37.39244 -33.15605 -32.29689 -30.50070 -29.77221 -28.17903 -25.36324 -23.13821 -22.82244 -20.13339 -18.89175 -16.79987 -16.52299 -16.02259 -15.42190 -14.76843 -14.42832 -14.05011 -13.48389 -13.09918 -12.80892 -12.45485 -12.29603 -11.92956 -11.87536 -11.54670 -11.37245 -10.97849 -10.69446 -10.60620 -10.47906 -9.93045 -9.76626 -9.29606 -9.15327 -8.55095 -7.37478 -6.02790 -3.99626 2.08606 3.27422 3.32149 3.34864 3.35355 4.04624 4.41955 4.59228 4.70583 4.81714 4.94742 5.28447 5.34455 5.48784 5.49483 5.59557 5.62242 5.76238 5.91888 6.03917 6.12990 6.39119 6.45557 6.81421 6.92759 7.06369 7.56221 7.70230 7.89389 8.02060 8.67360 9.08773 9.58153 11.10600 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048161 B = 0.007471 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.242016 B = 3746.813927 C = 3796.103556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 N -0.517 5.517 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.110 3.890 14 C 0.085 3.915 15 N -0.256 5.256 16 O -0.219 6.219 17 C 0.012 3.988 18 C -0.151 4.151 19 H 0.052 0.948 20 H 0.042 0.958 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.072 0.928 24 H -0.001 1.001 25 H 0.022 0.978 26 H 0.263 0.737 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 2.508 16.007 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.240 5.240 4 C 0.032 3.968 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.019 4.019 14 C -0.109 4.109 15 N 0.001 4.999 16 O -0.235 6.235 17 C -0.066 4.066 18 C -0.191 4.191 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.017 0.983 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.309 1.581 15.304 15.977 hybrid contribution -1.914 1.540 0.379 2.486 sum -6.223 3.121 15.683 17.159 Atomic orbital electron populations 1.22434 0.99729 1.01517 1.01275 1.22164 0.91479 0.90588 1.03254 1.62127 1.58970 1.02100 1.00830 1.20280 0.94886 0.93796 0.87852 1.21007 1.22931 1.20581 0.89770 0.90040 1.24897 0.95843 0.96698 0.95950 1.69896 1.41575 1.42660 0.99785 0.86894 0.82236 0.83170 0.77611 1.20214 1.21228 1.19318 1.20774 0.96549 0.98058 0.86556 1.26431 0.93634 0.94760 0.96108 1.78229 1.09597 1.13940 0.98168 1.91265 1.81139 1.36600 1.14523 1.24040 0.96740 0.90091 0.95709 1.23116 1.00971 1.03750 0.91288 0.92857 0.93922 0.91678 0.89492 0.90987 0.98332 0.95979 0.92695 0.92200 0.88467 0.88314 0.90809 0.88446 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.27 37.16 0.34 -2.90 16 2 C 0.05 1.06 5.62 -3.83 -0.02 1.03 16 3 N -0.52 -10.77 4.50 -237.51 -1.07 -11.84 16 4 C 0.16 3.70 3.66 -4.97 -0.02 3.68 16 5 C -0.50 -14.31 9.12 -34.44 -0.31 -14.62 16 6 H 0.08 2.57 7.68 -52.48 -0.40 2.17 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 9 Si 0.87 21.13 27.44 -169.99 -4.67 16.46 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.15 6.58 56.52 0.37 -5.78 16 13 C 0.11 1.76 5.34 -4.97 -0.03 1.73 16 14 C 0.09 1.29 6.83 -78.57 -0.54 0.75 16 15 N -0.26 -4.63 10.08 35.65 0.36 -4.27 16 16 O -0.22 -3.61 12.52 -11.36 -0.14 -3.75 16 17 C 0.01 0.14 8.24 38.09 0.31 0.45 16 18 C -0.15 -1.57 7.07 -26.46 -0.19 -1.76 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 20 H 0.04 0.64 6.36 -51.93 -0.33 0.31 16 21 H 0.06 1.21 6.19 -51.93 -0.32 0.89 16 22 H 0.09 1.94 7.15 -51.93 -0.37 1.57 16 23 H 0.07 1.39 5.89 -51.93 -0.31 1.09 16 24 H 0.00 -0.02 5.02 -51.93 -0.26 -0.28 16 25 H 0.02 0.51 7.18 -51.93 -0.37 0.14 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 28 H 0.10 1.42 7.87 -51.93 -0.41 1.01 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -32.31 258.34 -5.76 -38.07 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.37 Total: -1.89 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.54 Total: -9.78 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.06 Total: -43.00 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.14 Total: -3.75 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.31 -5.76 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.096 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds