Wall clock time and date at job start Mon Mar 30 2020 02:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47245 * 2 1 4 4 C 1.46907 * 111.00181 * 297.10075 * 3 2 1 5 5 C 1.50697 * 109.47100 * 288.65229 * 4 3 2 6 6 H 1.08003 * 119.99738 * 1.22505 * 5 4 3 7 7 C 1.37879 * 119.99778 * 181.23528 * 5 4 3 8 8 N 1.31516 * 119.99724 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00096 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47058 * 90.00498 * 9 7 5 11 11 H 1.48500 * 109.47006 * 210.00745 * 9 7 5 12 12 H 1.48505 * 109.46977 * 330.00382 * 9 7 5 13 13 C 1.46900 * 111.00335 * 61.05706 * 3 2 1 14 14 C 1.50702 * 109.47047 * 66.04255 * 13 3 2 15 15 N 1.27645 * 125.76765 * 359.97438 * 14 13 3 16 16 O 1.41381 * 113.16701 * 180.30118 * 15 14 13 17 17 C 1.44246 * 107.50789 * 342.62708 * 16 15 14 18 18 C 1.51680 * 125.76915 * 179.97438 * 14 13 3 19 19 H 1.08998 * 109.47176 * 178.77024 * 1 2 3 20 20 H 1.08997 * 109.47167 * 298.77544 * 1 2 3 21 21 H 1.09007 * 109.46501 * 58.77439 * 1 2 3 22 22 H 1.08998 * 109.47557 * 239.99771 * 2 1 3 23 23 H 1.09004 * 109.47152 * 119.99948 * 2 1 3 24 24 H 1.09000 * 109.46645 * 48.64654 * 4 3 2 25 25 H 1.08999 * 109.46845 * 168.64527 * 4 3 2 26 26 H 0.97002 * 119.99918 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.46653 * 306.04868 * 13 3 2 28 28 H 1.08993 * 109.47535 * 186.04824 * 13 3 2 29 29 H 1.09004 * 111.01124 * 143.17932 * 17 16 15 30 30 H 1.09002 * 111.01145 * 267.04283 * 17 16 15 31 31 H 1.09010 * 110.80484 * 77.05639 * 18 14 13 32 32 H 1.08999 * 110.80600 * 313.55377 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6062 2.0896 -1.2209 5 6 2.3832 1.5558 -2.3966 6 1 3.0972 0.7580 -2.2546 7 6 2.1829 2.0862 -3.6534 8 7 2.8607 1.6201 -4.6795 9 14 0.9477 3.4659 -3.8989 10 1 1.6271 4.7750 -3.7264 11 1 0.3764 3.3812 -5.2670 12 1 -0.1423 3.3382 -2.8985 13 6 1.5695 2.1026 1.2001 14 6 2.2129 1.4947 2.4198 15 7 3.0241 0.5092 2.4226 16 8 3.4612 0.1523 3.7189 17 6 3.1776 1.2635 4.5938 18 6 2.0061 1.9507 3.8516 19 1 -0.3633 -1.0274 -0.0221 20 1 -0.3633 0.4947 0.9007 21 1 -0.3632 0.5328 -0.8789 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 0.5406 1.9321 -1.3880 25 1 1.8027 3.1559 -1.1092 26 1 2.7194 1.9930 -5.5638 27 1 0.4855 2.0251 1.2845 28 1 1.8539 3.1520 1.1241 29 1 2.8658 0.9158 5.5787 30 1 4.0369 1.9298 4.6704 31 1 1.0470 1.6016 4.2344 32 1 2.0828 3.0353 3.9274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167558110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:18 Heat of formation + Delta-G solvation = 9.533718 kcal Electronic energy + Delta-G solvation = -14364.687362 eV Core-core repulsion = 11940.954755 eV Total energy + Delta-G solvation = -2423.732607 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04431 -38.90144 -34.86784 -33.93306 -31.49322 -31.29894 -29.88284 -26.87068 -24.65498 -24.02115 -21.69810 -20.19989 -18.85671 -17.61300 -17.07404 -16.86796 -16.40179 -16.02704 -15.46080 -14.91906 -14.46839 -14.22963 -13.96664 -13.51033 -13.30243 -13.23304 -12.88560 -12.70579 -12.38723 -12.34980 -12.23620 -11.94779 -11.74141 -11.45347 -11.12459 -10.73656 -10.25864 -8.94030 -8.23878 -6.27373 0.98694 1.37982 1.40766 1.50989 2.29479 2.38300 2.88996 3.09737 3.55962 3.76802 3.82714 4.08065 4.25175 4.30118 4.42694 4.54120 4.58463 4.61125 4.74425 4.76262 4.80119 4.94275 5.05390 5.16108 5.25049 5.45161 5.58752 5.99924 6.35957 6.59544 6.76944 6.79724 7.35373 8.93752 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048161 B = 0.007471 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.242016 B = 3746.813927 C = 3796.103556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 N -0.545 5.545 4 C 0.169 3.831 5 C -0.514 4.514 6 H 0.025 0.975 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.240 1.240 13 C 0.107 3.893 14 C 0.089 3.911 15 N -0.314 5.314 16 O -0.247 6.247 17 C 0.003 3.997 18 C -0.139 4.139 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.009 0.991 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 4.798 18.310 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.268 5.268 4 C 0.042 3.958 5 C -0.553 4.553 6 H 0.043 0.957 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.776 3.224 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.163 1.163 13 C -0.021 4.021 14 C -0.105 4.105 15 N -0.059 5.059 16 O -0.263 6.263 17 C -0.074 4.074 18 C -0.178 4.178 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.027 0.973 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.810 3.867 17.654 19.313 hybrid contribution -1.031 0.747 -0.269 1.301 sum -7.840 4.614 17.385 19.621 Atomic orbital electron populations 1.22318 0.97038 1.02687 1.01848 1.21992 0.93630 0.90156 1.01183 1.61910 1.60531 1.02581 1.01809 1.20025 0.94286 0.94184 0.87268 1.21276 1.22360 1.19262 0.92364 0.95675 1.25954 0.98293 0.99973 0.95278 1.70089 1.44049 1.44909 1.00541 0.85633 0.79714 0.79033 0.78042 1.18912 1.21240 1.16325 1.20946 0.98213 0.98397 0.84540 1.26688 0.92058 0.93693 0.98061 1.78218 1.11854 1.16162 0.99704 1.91207 1.81612 1.38816 1.14703 1.24408 0.97578 0.89155 0.96280 1.23165 1.01637 1.05509 0.87525 0.91463 0.91032 0.93178 0.93987 0.90680 0.97297 0.94624 0.92579 0.89413 0.86551 0.85333 0.90292 0.85948 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 9.27 71.98 0.67 -5.13 16 2 C 0.06 2.35 5.62 86.30 0.48 2.84 16 3 N -0.55 -22.39 4.50 -905.36 -4.07 -26.46 16 4 C 0.17 7.76 3.66 85.55 0.31 8.08 16 5 C -0.51 -30.19 9.12 25.60 0.23 -29.95 16 6 H 0.02 1.70 7.68 -2.91 -0.02 1.68 16 7 C 0.00 0.08 5.47 84.65 0.46 0.54 16 8 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 9 Si 0.95 43.05 27.44 68.60 1.88 44.93 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.24 -9.68 6.58 99.48 0.65 -9.03 16 13 C 0.11 3.10 5.34 85.56 0.46 3.56 16 14 C 0.09 2.45 6.83 46.90 0.32 2.77 16 15 N -0.31 -11.22 10.08 -40.62 -0.41 -11.63 16 16 O -0.25 -7.95 12.52 -38.30 -0.48 -8.43 16 17 C 0.00 0.06 8.24 72.59 0.60 0.65 16 18 C -0.14 -2.28 7.07 30.77 0.22 -2.07 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.07 1.87 6.36 -2.39 -0.02 1.86 16 21 H 0.05 1.76 6.19 -2.38 -0.01 1.74 16 22 H 0.04 2.01 7.15 -2.39 -0.02 1.99 16 23 H 0.07 2.96 5.89 -2.39 -0.01 2.95 16 24 H 0.01 0.42 5.02 -2.39 -0.01 0.40 16 25 H 0.04 1.55 7.18 -2.39 -0.02 1.53 16 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.09 2.08 6.06 -2.38 -0.01 2.07 16 28 H 0.12 2.92 7.87 -2.39 -0.02 2.90 16 29 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.98 258.34 2.03 -72.95 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.05 Total: 7.98 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 3.75 Total: -18.71 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -4.18 Total: -98.72 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.48 Total: -8.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Total: -74.98 2.03 -72.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.480 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds