Wall clock time and date at job start Mon Mar 30 2020 02:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.53006 * 109.46998 * 270.00232 * 3 2 1 5 5 N 1.46500 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.36931 * 120.00396 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99774 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00545 * 180.02562 * 6 5 4 9 9 N 1.31624 * 120.00512 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99852 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 90.00264 * 10 8 6 12 12 H 1.48499 * 109.47548 * 210.00043 * 10 8 6 13 13 H 1.48496 * 109.47428 * 330.00419 * 10 8 6 14 14 C 1.34773 * 119.99970 * 180.02562 * 2 1 3 15 15 O 1.21284 * 119.99889 * 179.97438 * 14 2 1 16 16 C 1.50702 * 120.00140 * 359.97438 * 14 2 1 17 17 C 1.52991 * 117.50079 * 248.62667 * 16 14 2 18 18 C 1.52999 * 60.00376 * 252.51332 * 17 16 14 19 19 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 20 20 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 21 21 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 22 22 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 23 23 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 24 24 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 25 25 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 26 26 H 0.97010 * 119.99909 * 359.97438 * 5 4 3 27 27 H 0.96997 * 120.00065 * 179.97438 * 9 8 6 28 28 H 1.09000 * 115.54582 * 34.34100 * 16 14 2 29 29 H 1.09003 * 117.50119 * 0.02562 * 17 16 14 30 30 H 1.09000 * 117.49985 * 145.02366 * 17 16 14 31 31 H 1.08996 * 117.49801 * 252.51775 * 18 17 16 32 32 H 1.08997 * 117.52038 * 107.47977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1855 2.9789 -1.4426 6 6 3.5274 3.5721 -2.6284 7 1 3.2571 3.1047 -3.5637 8 6 4.2224 4.7737 -2.6284 9 7 4.5515 5.3436 -3.7683 10 14 4.6906 5.5818 -1.0107 11 1 6.0266 5.0950 -0.5826 12 1 4.7342 7.0556 -1.1879 13 1 3.6833 5.2374 0.0246 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 6 1.4610 -3.3317 1.2630 18 6 2.2076 -3.7627 -0.0010 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 3.1500 1.1384 0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.0414 0.9508 -1.9564 25 1 1.5000 1.8408 -1.9563 26 1 3.4280 3.3989 -0.6024 27 1 5.0368 6.1835 -3.7682 28 1 0.4469 -2.4733 -0.5549 29 1 2.0554 -2.9529 2.0945 30 1 0.5720 -3.8982 1.5402 31 1 1.8097 -4.6126 -0.5554 32 1 3.2934 -3.6676 -0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266624216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:27 Heat of formation + Delta-G solvation = 8.691021 kcal Electronic energy + Delta-G solvation = -13924.823859 eV Core-core repulsion = 11501.054710 eV Total energy + Delta-G solvation = -2423.769149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04801 -36.73660 -35.63520 -34.44806 -31.52749 -28.87991 -26.64652 -24.84877 -22.69884 -22.51529 -21.24398 -18.95302 -17.68024 -17.36517 -16.06564 -15.44483 -14.91926 -14.44773 -13.96446 -13.68218 -13.51622 -12.97376 -12.67745 -12.64155 -12.29669 -11.71930 -11.55552 -11.18584 -11.04693 -10.78715 -10.74099 -10.57915 -10.15203 -9.71558 -9.57150 -8.87091 -8.55760 -7.21846 -5.73960 -3.10079 2.52325 3.00986 3.39664 3.43629 3.47770 3.72645 4.40866 4.61951 4.62275 4.71977 4.94064 5.06552 5.33954 5.36229 5.39928 5.55029 5.57256 5.62689 5.66728 5.76377 5.78228 5.96224 5.97314 6.48302 6.66554 6.83927 7.45209 8.01322 8.27084 8.44434 9.22963 9.95138 10.14659 11.44464 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055888 B = 0.006037 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.881911 B = 4637.195036 C = 4678.885350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.104 3.896 4 C 0.146 3.854 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.539 3.461 15 O -0.534 6.534 16 C -0.192 4.192 17 C -0.154 4.154 18 C -0.149 4.149 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.361 0.639 27 H 0.260 0.740 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 -15.663 11.107 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C -0.018 4.018 4 C 0.018 3.982 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.191 4.191 9 N -0.583 5.583 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.327 3.673 15 O -0.410 6.410 16 C -0.213 4.213 17 C -0.192 4.192 18 C -0.186 4.186 19 H 0.076 0.924 20 H 0.090 0.910 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.095 0.905 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.193 0.807 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.266 -15.601 10.860 21.604 hybrid contribution 0.173 0.820 0.922 1.246 sum -10.094 -14.781 11.781 21.428 Atomic orbital electron populations 1.21816 0.79481 1.02986 1.02081 1.47678 1.07038 1.06023 1.73521 1.21752 0.97499 0.83453 0.99130 1.20894 0.95390 0.88595 0.93308 1.42563 1.68775 1.23193 1.05458 1.19041 1.29664 1.02912 0.85677 0.89244 1.24666 1.00439 0.97607 0.96427 1.69705 1.44921 1.19717 1.23924 0.86518 0.78612 0.78912 0.84315 1.20960 1.21669 1.20374 1.19674 0.87378 0.84346 0.75922 1.90722 1.13829 1.87119 1.49362 1.22228 1.02689 0.90975 1.05431 1.22915 1.03145 1.01627 0.91492 1.22953 1.00248 0.95357 1.00066 0.92400 0.91042 0.90883 0.89858 0.90529 0.95103 0.95563 0.80678 0.93041 0.85854 0.88355 0.87927 0.87987 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.05 59.85 0.60 1.36 16 2 N -0.61 -8.62 2.87 -181.56 -0.52 -9.14 16 3 C 0.10 1.76 5.56 -4.04 -0.02 1.74 16 4 C 0.15 3.09 6.58 -4.04 -0.03 3.06 16 5 N -0.75 -19.01 5.41 -59.91 -0.32 -19.34 16 6 C -0.24 -7.22 10.47 -15.06 -0.16 -7.38 16 7 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 8 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 9 N -0.93 -30.14 13.97 55.49 0.78 -29.36 16 10 Si 0.89 22.70 27.74 -169.99 -4.71 17.99 16 11 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 14 C 0.54 8.20 7.46 -10.99 -0.08 8.12 16 15 O -0.53 -10.46 15.84 5.55 0.09 -10.37 16 16 C -0.19 -2.04 4.80 -91.77 -0.44 -2.48 16 17 C -0.15 -1.33 10.23 -26.74 -0.27 -1.60 16 18 C -0.15 -1.46 10.04 -26.73 -0.27 -1.73 16 19 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.07 0.51 6.64 -51.93 -0.34 0.17 16 21 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 22 H 0.08 1.53 7.42 -51.93 -0.39 1.15 16 23 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.36 8.74 5.53 -40.82 -0.23 8.51 16 27 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 28 H 0.12 1.03 7.26 -51.93 -0.38 0.66 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -35.21 272.79 -6.03 -41.24 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.68 Total: 3.75 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.77 Total: 1.12 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.07 Total: -57.84 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -35.21 -6.03 -41.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266624216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.930 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds