Wall clock time and date at job start Mon Mar 30 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47143 * 2 1 4 4 C 1.52993 * 109.47457 * 120.00458 * 2 1 3 5 5 N 1.46496 * 109.47551 * 175.00099 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.53001 * 117.49756 * 248.61806 * 8 6 5 10 10 C 1.52999 * 59.99986 * 252.51526 * 9 8 6 11 11 N 1.46501 * 109.46955 * 240.00234 * 2 1 3 12 12 C 1.36939 * 119.99786 * 84.99875 * 11 2 1 13 13 H 1.07994 * 120.00615 * 0.02562 * 12 11 2 14 14 C 1.38818 * 119.99654 * 179.97438 * 12 11 2 15 15 N 1.31619 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46664 * 119.99940 * 16 14 12 19 19 H 1.48490 * 109.47263 * 240.00220 * 16 14 12 20 20 H 1.09001 * 109.47387 * 59.99917 * 1 2 3 21 21 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47098 * 299.99782 * 1 2 3 23 23 H 1.09000 * 109.47250 * 54.99877 * 4 2 1 24 24 H 1.09004 * 109.46862 * 294.99900 * 4 2 1 25 25 H 0.96999 * 119.99694 * 359.97438 * 5 4 2 26 26 H 1.08996 * 115.55128 * 34.33271 * 8 6 5 27 27 H 1.09004 * 117.49834 * 0.02562 * 9 8 6 28 28 H 1.08997 * 117.49999 * 145.02096 * 9 8 6 29 29 H 1.09004 * 117.50109 * 252.51157 * 10 9 8 30 30 H 1.08998 * 117.52032 * 107.48340 * 10 9 8 31 31 H 0.96998 * 120.00221 * 264.99915 * 11 2 1 32 32 H 0.97001 * 119.99582 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1905 7 8 3.5700 -1.8844 3.1392 8 6 5.6750 -1.5379 2.1298 9 6 6.2753 -2.9322 1.9388 10 6 6.3806 -2.2333 3.2957 11 7 2.0183 -0.6906 -1.1962 12 6 2.1490 -0.0074 -2.3758 13 1 1.8926 1.0406 -2.4242 14 6 2.6122 -0.6616 -3.5091 15 7 2.9252 -1.9387 -3.4501 16 14 2.7899 0.2702 -5.1184 17 1 2.3750 1.6824 -4.9211 18 1 4.2068 0.2283 -5.5607 19 1 1.9297 -0.3591 -6.1523 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6055 -1.7199 1.2950 24 1 1.7517 -0.1584 2.1369 25 1 3.9823 -0.4628 0.4315 26 1 6.1882 -0.6996 1.6587 27 1 5.5839 -3.7709 1.8566 28 1 7.1837 -3.0115 1.3416 29 1 7.3583 -1.8527 3.5914 30 1 5.7586 -2.6118 4.1068 31 1 2.2490 -1.6317 -1.1527 32 1 3.2485 -2.3958 -4.2422 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317223267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:43 Heat of formation + Delta-G solvation = -11.280147 kcal Electronic energy + Delta-G solvation = -14032.364283 eV Core-core repulsion = 11607.729119 eV Total energy + Delta-G solvation = -2424.635164 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57686 -36.70206 -35.63210 -33.48762 -31.82226 -28.77082 -26.45527 -23.90543 -23.03791 -22.33031 -20.19048 -19.49736 -17.49543 -16.96867 -15.75302 -15.23730 -14.77878 -14.43986 -13.93188 -13.64591 -13.11479 -12.41747 -12.20082 -12.10150 -11.95653 -11.50054 -11.38496 -10.91057 -10.77368 -10.53208 -10.42790 -10.31030 -10.00718 -9.73971 -9.51359 -9.00759 -8.58907 -7.05872 -5.83349 -3.13613 2.82281 3.38293 3.44638 3.46625 3.54953 4.02728 4.52809 4.86658 4.98282 4.99695 5.32079 5.45991 5.47789 5.57727 5.65944 5.83601 5.94389 6.04055 6.09411 6.17554 6.18838 6.33209 6.55842 6.74802 6.86526 7.04888 7.64606 7.99730 8.34061 8.62653 9.46039 10.01135 10.36894 11.38610 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.007988 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.279438 B = 3504.424213 C = 4214.954446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.707 5.707 6 C 0.539 3.461 7 O -0.559 6.559 8 C -0.191 4.191 9 C -0.151 4.151 10 C -0.152 4.152 11 N -0.724 5.724 12 C -0.243 4.243 13 H 0.071 0.929 14 C -0.011 4.011 15 N -0.929 5.929 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.411 0.589 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.385 0.615 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 1.895 9.296 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.358 5.358 6 C 0.325 3.675 7 O -0.438 6.438 8 C -0.212 4.212 9 C -0.188 4.188 10 C -0.190 4.190 11 N -0.366 5.366 12 C -0.374 4.374 13 H 0.089 0.911 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.248 0.752 26 H 0.140 0.860 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.219 0.781 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.907 1.717 9.808 10.696 hybrid contribution 0.302 0.368 -1.489 1.563 sum 4.209 2.084 8.319 9.554 Atomic orbital electron populations 1.22361 0.98303 1.01274 1.00361 1.20512 0.92690 0.95738 0.86173 0.92875 1.21688 0.79626 1.01058 0.98604 1.45914 1.08122 1.58566 1.23202 1.19612 0.88210 0.77504 0.82206 1.90640 1.70127 1.49009 1.34045 1.22186 0.93007 0.99083 1.06953 1.22903 1.02527 0.93673 0.99712 1.22913 1.01189 1.02601 0.92250 1.42483 1.78066 1.10845 1.05247 1.19274 1.36831 0.93917 0.87340 0.91056 1.24752 1.02021 0.95929 0.98034 1.69678 1.50599 1.08627 1.28829 0.86140 0.77284 0.78799 0.84069 1.20572 1.21888 1.21883 0.92318 0.93210 0.94190 0.91923 0.91900 0.75229 0.86004 0.88247 0.87889 0.88279 0.87648 0.78071 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.02 3.05 -67.93 -0.21 2.81 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.11 2.02 5.23 -4.05 -0.02 2.00 16 5 N -0.71 -12.24 5.39 -60.30 -0.32 -12.56 16 6 C 0.54 9.31 7.61 -10.98 -0.08 9.23 16 7 O -0.56 -11.26 16.26 5.56 0.09 -11.17 16 8 C -0.19 -2.62 6.19 -91.77 -0.57 -3.19 16 9 C -0.15 -1.87 10.23 -26.73 -0.27 -2.14 16 10 C -0.15 -1.81 10.04 -26.73 -0.27 -2.07 16 11 N -0.72 -17.09 4.56 -53.43 -0.24 -17.34 16 12 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -27.12 13.06 55.49 0.72 -26.39 16 16 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.41 7.17 8.14 -40.82 -0.33 6.83 16 26 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.38 7.67 -51.93 -0.40 0.98 16 31 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -30.07 278.52 -6.71 -36.79 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.82 Total: 12.61 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.31 Total: -2.80 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.16 Total: -56.29 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.07 -6.71 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317223267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.508 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds