Wall clock time and date at job start Mon Mar 30 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47143 * 2 1 4 4 C 1.52993 * 109.47457 * 120.00458 * 2 1 3 5 5 N 1.46496 * 109.47551 * 175.00099 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.53001 * 117.49756 * 248.61806 * 8 6 5 10 10 C 1.52999 * 59.99986 * 252.51526 * 9 8 6 11 11 N 1.46501 * 109.46955 * 240.00234 * 2 1 3 12 12 C 1.36939 * 119.99786 * 84.99875 * 11 2 1 13 13 H 1.07994 * 120.00615 * 0.02562 * 12 11 2 14 14 C 1.38818 * 119.99654 * 179.97438 * 12 11 2 15 15 N 1.31619 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46664 * 119.99940 * 16 14 12 19 19 H 1.48490 * 109.47263 * 240.00220 * 16 14 12 20 20 H 1.09001 * 109.47387 * 59.99917 * 1 2 3 21 21 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47098 * 299.99782 * 1 2 3 23 23 H 1.09000 * 109.47250 * 54.99877 * 4 2 1 24 24 H 1.09004 * 109.46862 * 294.99900 * 4 2 1 25 25 H 0.96999 * 119.99694 * 359.97438 * 5 4 2 26 26 H 1.08996 * 115.55128 * 34.33271 * 8 6 5 27 27 H 1.09004 * 117.49834 * 0.02562 * 9 8 6 28 28 H 1.08997 * 117.49999 * 145.02096 * 9 8 6 29 29 H 1.09004 * 117.50109 * 252.51157 * 10 9 8 30 30 H 1.08998 * 117.52032 * 107.48340 * 10 9 8 31 31 H 0.96998 * 120.00221 * 264.99915 * 11 2 1 32 32 H 0.97001 * 119.99582 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1905 7 8 3.5700 -1.8844 3.1392 8 6 5.6750 -1.5379 2.1298 9 6 6.2753 -2.9322 1.9388 10 6 6.3806 -2.2333 3.2957 11 7 2.0183 -0.6906 -1.1962 12 6 2.1490 -0.0074 -2.3758 13 1 1.8926 1.0406 -2.4242 14 6 2.6122 -0.6616 -3.5091 15 7 2.9252 -1.9387 -3.4501 16 14 2.7899 0.2702 -5.1184 17 1 2.3750 1.6824 -4.9211 18 1 4.2068 0.2283 -5.5607 19 1 1.9297 -0.3591 -6.1523 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6055 -1.7199 1.2950 24 1 1.7517 -0.1584 2.1369 25 1 3.9823 -0.4628 0.4315 26 1 6.1882 -0.6996 1.6587 27 1 5.5839 -3.7709 1.8566 28 1 7.1837 -3.0115 1.3416 29 1 7.3583 -1.8527 3.5914 30 1 5.7586 -2.6118 4.1068 31 1 2.2490 -1.6317 -1.1527 32 1 3.2485 -2.3958 -4.2422 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317223267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:43 Heat of formation + Delta-G solvation = -31.767527 kcal Electronic energy + Delta-G solvation = -14033.252683 eV Core-core repulsion = 11607.729119 eV Total energy + Delta-G solvation = -2425.523563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91614 -38.16423 -36.90427 -35.17336 -33.59218 -30.60010 -27.83224 -25.78630 -24.38172 -23.28209 -21.74189 -20.84034 -19.34545 -18.31655 -17.20318 -16.83029 -16.21695 -15.89428 -15.48427 -15.14864 -14.78312 -13.95518 -13.68375 -13.47992 -13.41818 -13.08973 -12.81268 -12.50708 -12.42382 -12.13371 -11.73510 -11.66173 -11.52136 -11.40943 -11.02124 -10.85503 -10.02326 -9.02876 -7.91572 -5.20885 1.49682 1.51112 1.52144 1.60006 2.25891 2.57903 2.96957 3.42655 3.76532 3.85792 3.92431 3.98892 4.02520 4.25109 4.38530 4.62441 4.72361 4.74450 4.82561 4.94387 5.03722 5.05455 5.23649 5.24859 5.41667 5.56635 5.60015 6.29024 6.60759 7.25247 7.36349 8.08192 8.33096 9.31308 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.007988 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.279438 B = 3504.424213 C = 4214.954446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.122 3.878 5 N -0.708 5.708 6 C 0.533 3.467 7 O -0.593 6.593 8 C -0.206 4.206 9 C -0.150 4.150 10 C -0.137 4.137 11 N -0.732 5.732 12 C -0.235 4.235 13 H 0.079 0.921 14 C -0.071 4.071 15 N -0.967 5.967 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.295 1.295 19 H -0.300 1.300 20 H 0.045 0.955 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.411 0.589 26 H 0.144 0.856 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.372 0.628 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 3.176 9.723 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.358 5.358 6 C 0.321 3.679 7 O -0.475 6.475 8 C -0.227 4.227 9 C -0.187 4.187 10 C -0.174 4.174 11 N -0.373 5.373 12 C -0.366 4.366 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.617 5.617 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.222 1.222 19 H -0.227 1.227 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.248 0.752 26 H 0.162 0.838 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.204 0.796 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.554 3.043 10.260 11.630 hybrid contribution 0.050 -0.014 -1.531 1.532 sum 4.604 3.029 8.729 10.323 Atomic orbital electron populations 1.22241 0.96756 1.01140 1.01425 1.20681 0.93628 0.95644 0.84974 0.92132 1.21575 0.79974 1.00255 0.98430 1.45949 1.08002 1.58562 1.23250 1.20254 0.89808 0.76464 0.81389 1.90617 1.71240 1.50374 1.35245 1.22275 0.90615 1.00649 1.09174 1.23001 1.02838 0.92186 1.00721 1.23006 1.01968 1.01242 0.91212 1.42613 1.78337 1.10302 1.06059 1.19620 1.34712 0.94205 0.88092 0.90351 1.25472 1.03052 0.96724 1.01134 1.69827 1.52565 1.10149 1.29190 0.85152 0.76619 0.78234 0.80187 1.19060 1.22207 1.22749 0.93536 0.93980 0.90785 0.93408 0.90207 0.75246 0.83848 0.90009 0.85457 0.85002 0.89228 0.79574 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.16 5.85 3.05 44.99 0.14 5.98 16 3 H 0.06 2.16 8.08 -2.39 -0.02 2.15 16 4 C 0.12 4.19 5.23 86.38 0.45 4.64 16 5 N -0.71 -24.05 5.39 -463.07 -2.49 -26.55 16 6 C 0.53 18.13 7.61 87.66 0.67 18.80 16 7 O -0.59 -23.86 16.26 -3.03 -0.05 -23.91 16 8 C -0.21 -5.33 6.19 -11.54 -0.07 -5.40 16 9 C -0.15 -3.49 10.23 30.59 0.31 -3.18 16 10 C -0.14 -2.97 10.04 30.59 0.31 -2.66 16 11 N -0.73 -34.31 4.56 -322.95 -1.47 -35.78 16 12 C -0.23 -12.16 9.93 84.03 0.83 -11.32 16 13 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 14 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 15 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 16 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.41 14.06 8.14 -92.71 -0.75 13.30 16 26 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 2.25 7.67 -2.39 -0.02 2.24 16 31 H 0.37 19.32 7.80 -92.71 -0.72 18.59 16 32 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -63.76 278.52 1.72 -62.04 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.36 Total: 35.54 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 3.79 Total: -1.07 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -3.69 Total: -119.06 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.76 1.72 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317223267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.275 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds