Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46891 * 109.47655 * 2 1 4 4 C 1.47479 * 111.00303 * 256.43373 * 3 2 1 5 5 C 1.53507 * 87.93308 * 221.29292 * 4 3 2 6 6 C 1.47472 * 111.00433 * 160.45833 * 3 2 1 7 7 H 1.09001 * 113.48174 * 253.53474 * 6 3 2 8 8 C 1.50709 * 113.47537 * 23.93768 * 6 3 2 9 9 O 1.21293 * 119.99572 * 28.77473 * 8 6 3 10 10 N 1.34774 * 119.99868 * 208.78142 * 8 6 3 11 11 C 1.46499 * 120.00335 * 359.97438 * 10 8 6 12 12 C 1.37096 * 119.99586 * 180.02562 * 10 8 6 13 13 H 1.07999 * 120.00277 * 342.27422 * 12 10 8 14 14 C 1.38955 * 120.00174 * 162.27429 * 12 10 8 15 15 N 1.31412 * 119.99485 * 331.15883 * 14 12 10 16 16 Si 1.86795 * 120.00038 * 151.15281 * 14 12 10 17 17 H 1.48504 * 109.46997 * 270.00351 * 16 14 12 18 18 H 1.48496 * 109.47164 * 30.00370 * 16 14 12 19 19 H 1.48496 * 109.47044 * 150.00236 * 16 14 12 20 20 H 1.08997 * 109.47084 * 300.00479 * 1 2 3 21 21 H 1.09007 * 109.46653 * 60.00224 * 1 2 3 22 22 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47084 * 239.99521 * 2 1 3 24 24 H 1.09008 * 109.46593 * 120.00325 * 2 1 3 25 25 H 1.09002 * 113.47521 * 336.06059 * 4 3 2 26 26 H 1.09001 * 113.47730 * 106.52065 * 4 3 2 27 27 H 1.08996 * 114.17047 * 272.37280 * 5 4 3 28 28 H 1.09006 * 114.17118 * 139.66865 * 5 4 3 29 29 H 1.08994 * 109.47558 * 275.91576 * 11 10 8 30 30 H 1.09003 * 109.46949 * 35.91722 * 11 10 8 31 31 H 1.09003 * 109.46625 * 155.90610 * 11 10 8 32 32 H 0.97008 * 119.99226 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.5005 1.7755 -1.3384 5 6 3.6777 2.4795 -0.6491 6 6 3.4192 1.4506 0.4605 7 1 3.5270 1.8582 1.4657 8 6 4.1749 0.1605 0.2709 9 8 3.8711 -0.5935 -0.6293 10 7 5.1880 -0.1553 1.1017 11 6 5.5552 0.7556 2.1887 12 6 5.8757 -1.3286 0.9288 13 1 5.4482 -2.1227 0.3347 14 6 7.1230 -1.4963 1.5180 15 7 7.8915 -0.4531 1.7372 16 14 7.7069 -3.2043 1.9986 17 1 7.2849 -3.4978 3.3918 18 1 7.1123 -4.2076 1.0795 19 1 9.1878 -3.2651 1.9067 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.8018 0.9292 -1.9557 26 1 1.8296 2.4594 -1.8583 27 1 3.4733 3.5100 -0.3586 28 1 4.6329 2.3552 -1.1594 29 1 6.2272 1.5243 1.8073 30 1 4.6563 1.2248 2.5887 31 1 6.0549 0.1954 2.9790 32 1 8.7621 -0.5701 2.1489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442642326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = 17.537918 kcal Electronic energy + Delta-G solvation = -14866.289068 eV Core-core repulsion = 12442.903549 eV Total energy + Delta-G solvation = -2423.385519 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47865 -37.16211 -34.57769 -32.34834 -31.67348 -27.05500 -26.80989 -25.85068 -24.11261 -21.47119 -20.80851 -18.02444 -16.94960 -16.46063 -15.37853 -15.01452 -14.71379 -14.03988 -13.87463 -13.66582 -12.81338 -12.38142 -12.17775 -11.89836 -11.62988 -11.43655 -11.36097 -10.95420 -10.86828 -10.52035 -10.39347 -10.37655 -10.12180 -9.86464 -9.30906 -9.00986 -7.87007 -7.65969 -6.47705 -3.86101 3.10296 3.22899 3.27747 3.66357 4.08221 4.58550 4.73919 4.90820 5.14034 5.41346 5.56574 5.69254 5.73596 5.83722 5.95541 6.02959 6.13825 6.19748 6.24589 6.34094 6.40876 6.58615 6.69519 6.75922 6.88560 7.01116 7.50286 7.52123 8.04867 8.40633 9.11577 9.36082 9.92606 10.58393 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.009274 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.418035 B = 3018.383876 C = 3327.351048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.012 3.988 3 N -0.459 5.459 4 C 0.000 4.000 5 C -0.130 4.130 6 C 0.011 3.989 7 H 0.099 0.901 8 C 0.435 3.565 9 O -0.588 6.588 10 N -0.432 5.432 11 C 0.103 3.897 12 C -0.320 4.320 13 H 0.103 0.897 14 C 0.038 3.962 15 N -0.859 5.859 16 Si 0.914 3.086 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.284 1.284 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 4.288 0.136 7.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 N -0.182 5.182 4 C -0.129 4.129 5 C -0.168 4.168 6 C -0.102 4.102 7 H 0.117 0.883 8 C 0.222 3.778 9 O -0.475 6.475 10 N -0.149 5.149 11 C -0.041 4.041 12 C -0.448 4.448 13 H 0.120 0.880 14 C -0.168 4.168 15 N -0.496 5.496 16 Si 0.741 3.259 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.210 1.210 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.969 4.303 0.151 8.192 hybrid contribution 1.117 -1.230 0.123 1.666 sum -5.852 3.073 0.274 6.615 Atomic orbital electron populations 1.21706 0.96180 1.00468 1.01335 1.22779 0.94663 0.90576 1.03653 1.69053 1.15254 1.21855 1.12020 1.23896 0.95707 1.00123 0.93207 1.22986 0.99243 0.97795 0.96806 1.23274 0.90308 0.95664 1.00970 0.88333 1.19976 0.85525 0.88114 0.84151 1.90456 1.69577 1.52945 1.34478 1.43652 1.27995 1.18797 1.24494 1.21552 0.97350 0.94020 0.91178 1.19629 0.99938 0.91787 1.33396 0.87975 1.25240 0.94895 0.98926 0.97708 1.70155 1.09105 1.30673 1.39686 0.86119 0.77504 0.82968 0.79348 1.20254 1.19249 1.21018 0.92983 0.93349 0.93074 0.90093 0.91951 0.89589 0.90951 0.89149 0.90602 0.92944 0.94626 0.90928 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.01 0.22 4.47 -3.83 -0.02 0.20 16 3 N -0.46 -8.44 6.33 -237.95 -1.51 -9.95 16 4 C 0.00 -0.01 7.38 -7.56 -0.06 -0.06 16 5 C -0.13 -2.20 8.05 -26.20 -0.21 -2.41 16 6 C 0.01 0.21 3.99 -72.59 -0.29 -0.08 16 7 H 0.10 1.81 5.91 -51.93 -0.31 1.50 16 8 C 0.43 10.51 5.85 -10.98 -0.06 10.44 16 9 O -0.59 -15.67 12.11 5.55 0.07 -15.61 16 10 N -0.43 -11.03 3.02 -122.19 -0.37 -11.40 16 11 C 0.10 2.27 8.52 59.85 0.51 2.78 16 12 C -0.32 -8.88 9.25 -14.93 -0.14 -9.02 16 13 H 0.10 3.00 7.45 -52.49 -0.39 2.61 16 14 C 0.04 1.00 4.65 -17.47 -0.08 0.91 16 15 N -0.86 -22.72 11.52 55.50 0.64 -22.08 16 16 Si 0.91 20.37 29.64 -169.99 -5.04 15.33 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.71 5.45 -51.93 -0.28 1.43 16 24 H 0.06 1.30 7.30 -51.92 -0.38 0.92 16 25 H 0.09 1.68 6.22 -51.93 -0.32 1.35 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 29 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 30 H 0.04 0.66 6.10 -51.93 -0.32 0.35 16 31 H 0.07 1.68 6.68 -51.93 -0.35 1.33 16 32 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 256.59 15.07 3.87 3.87 Total: -1.00 -29.26 256.59 -6.74 -36.00 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.43 Total: 2.80 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 0.03 Total: 1.03 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -1.24 Total: -43.43 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.07 Total: -15.61 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.04 Total: 15.33 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.26 -6.74 -36.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442642326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.541 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds