Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46891 * 109.47655 * 2 1 4 4 C 1.47479 * 111.00303 * 256.43373 * 3 2 1 5 5 C 1.53507 * 87.93308 * 221.29292 * 4 3 2 6 6 C 1.47472 * 111.00433 * 160.45833 * 3 2 1 7 7 H 1.09001 * 113.48174 * 253.53474 * 6 3 2 8 8 C 1.50709 * 113.47537 * 23.93768 * 6 3 2 9 9 O 1.21293 * 119.99572 * 28.77473 * 8 6 3 10 10 N 1.34774 * 119.99868 * 208.78142 * 8 6 3 11 11 C 1.46499 * 120.00335 * 359.97438 * 10 8 6 12 12 C 1.37096 * 119.99586 * 180.02562 * 10 8 6 13 13 H 1.07999 * 120.00277 * 342.27422 * 12 10 8 14 14 C 1.38955 * 120.00174 * 162.27429 * 12 10 8 15 15 N 1.31412 * 119.99485 * 331.15883 * 14 12 10 16 16 Si 1.86795 * 120.00038 * 151.15281 * 14 12 10 17 17 H 1.48504 * 109.46997 * 270.00351 * 16 14 12 18 18 H 1.48496 * 109.47164 * 30.00370 * 16 14 12 19 19 H 1.48496 * 109.47044 * 150.00236 * 16 14 12 20 20 H 1.08997 * 109.47084 * 300.00479 * 1 2 3 21 21 H 1.09007 * 109.46653 * 60.00224 * 1 2 3 22 22 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47084 * 239.99521 * 2 1 3 24 24 H 1.09008 * 109.46593 * 120.00325 * 2 1 3 25 25 H 1.09002 * 113.47521 * 336.06059 * 4 3 2 26 26 H 1.09001 * 113.47730 * 106.52065 * 4 3 2 27 27 H 1.08996 * 114.17047 * 272.37280 * 5 4 3 28 28 H 1.09006 * 114.17118 * 139.66865 * 5 4 3 29 29 H 1.08994 * 109.47558 * 275.91576 * 11 10 8 30 30 H 1.09003 * 109.46949 * 35.91722 * 11 10 8 31 31 H 1.09003 * 109.46625 * 155.90610 * 11 10 8 32 32 H 0.97008 * 119.99226 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 2.5005 1.7755 -1.3384 5 6 3.6777 2.4795 -0.6491 6 6 3.4192 1.4506 0.4605 7 1 3.5270 1.8582 1.4657 8 6 4.1749 0.1605 0.2709 9 8 3.8711 -0.5935 -0.6293 10 7 5.1880 -0.1553 1.1017 11 6 5.5552 0.7556 2.1887 12 6 5.8757 -1.3286 0.9288 13 1 5.4482 -2.1227 0.3347 14 6 7.1230 -1.4963 1.5180 15 7 7.8915 -0.4531 1.7372 16 14 7.7069 -3.2043 1.9986 17 1 7.2849 -3.4978 3.3918 18 1 7.1123 -4.2076 1.0795 19 1 9.1878 -3.2651 1.9067 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.8018 0.9292 -1.9557 26 1 1.8296 2.4594 -1.8583 27 1 3.4733 3.5100 -0.3586 28 1 4.6329 2.3552 -1.1594 29 1 6.2272 1.5243 1.8073 30 1 4.6563 1.2248 2.5887 31 1 6.0549 0.1954 2.9790 32 1 8.7621 -0.5701 2.1489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442642326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -3.798104 kcal Electronic energy + Delta-G solvation = -14867.214268 eV Core-core repulsion = 12442.903549 eV Total energy + Delta-G solvation = -2424.310718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09466 -38.95966 -36.54054 -33.96057 -33.48012 -28.87888 -28.15847 -27.59519 -25.95588 -22.90550 -22.46547 -19.75906 -18.93530 -18.18959 -17.00327 -16.68832 -16.46035 -15.70078 -15.62089 -15.39569 -14.37677 -14.09973 -13.53806 -13.47605 -13.38830 -13.23254 -13.00691 -12.69297 -12.42335 -12.27968 -12.17455 -11.92003 -11.61148 -11.36558 -11.01314 -10.96341 -9.79382 -9.45367 -8.47817 -5.95191 1.31080 1.39507 1.50967 1.85497 2.24021 2.89818 2.96376 3.16681 3.56273 3.87351 4.04165 4.11272 4.31236 4.47953 4.52323 4.64567 4.71024 4.78093 4.85418 4.88511 4.96420 5.07102 5.18848 5.22693 5.32460 5.41512 5.43826 5.98030 6.03355 6.41130 7.11308 7.40912 7.98771 8.57432 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.009274 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.418035 B = 3018.383876 C = 3327.351048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.016 3.984 3 N -0.447 5.447 4 C 0.000 4.000 5 C -0.115 4.115 6 C 0.005 3.995 7 H 0.117 0.883 8 C 0.428 3.572 9 O -0.623 6.623 10 N -0.451 5.451 11 C 0.111 3.889 12 C -0.359 4.359 13 H 0.071 0.929 14 C 0.009 3.991 15 N -0.876 5.876 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.273 1.273 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.130 0.870 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 5.492 0.859 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 N -0.169 5.169 4 C -0.129 4.129 5 C -0.153 4.153 6 C -0.108 4.108 7 H 0.134 0.866 8 C 0.217 3.783 9 O -0.511 6.511 10 N -0.168 5.168 11 C -0.032 4.032 12 C -0.487 4.487 13 H 0.088 0.912 14 C -0.195 4.195 15 N -0.512 5.512 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.198 1.198 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.611 5.532 0.886 9.451 hybrid contribution 1.307 -1.587 -0.154 2.062 sum -6.304 3.945 0.733 7.472 Atomic orbital electron populations 1.21624 0.92903 1.01647 1.02462 1.22664 0.97316 0.90409 1.00918 1.69132 1.14050 1.21015 1.12729 1.23872 0.96718 0.99725 0.92568 1.23069 0.98418 0.98980 0.94882 1.23276 0.90635 0.93901 1.02943 0.86577 1.20875 0.85013 0.89246 0.83179 1.90440 1.70369 1.54489 1.35786 1.43903 1.28343 1.18898 1.25697 1.21535 0.98758 0.93055 0.89816 1.19496 1.01184 0.92623 1.35387 0.91151 1.25958 0.94327 1.02574 0.96690 1.70180 1.09431 1.32256 1.39336 0.85171 0.77340 0.78156 0.79111 1.18937 1.20119 1.19772 0.91850 0.92072 0.92010 0.93029 0.94617 0.92594 0.87480 0.85161 0.91984 0.93421 0.91062 0.92371 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 10.24 71.98 0.74 -2.94 16 2 C 0.02 0.59 4.47 86.31 0.39 0.98 16 3 N -0.45 -15.66 6.33 -906.73 -5.74 -21.40 16 4 C 0.00 0.00 7.38 83.57 0.62 0.62 16 5 C -0.12 -3.63 8.05 30.94 0.25 -3.38 16 6 C 0.01 0.20 3.99 41.44 0.17 0.36 16 7 H 0.12 3.96 5.91 -2.39 -0.01 3.94 16 8 C 0.43 21.11 5.85 87.66 0.51 21.62 16 9 O -0.62 -34.68 12.11 -3.07 -0.04 -34.71 16 10 N -0.45 -23.48 3.02 -658.88 -1.99 -25.47 16 11 C 0.11 4.88 8.52 127.77 1.09 5.97 16 12 C -0.36 -20.62 9.25 84.04 0.78 -19.85 16 13 H 0.07 4.38 7.45 -2.91 -0.02 4.36 16 14 C 0.01 0.48 4.65 84.93 0.39 0.88 16 15 N -0.88 -46.21 11.52 21.66 0.25 -45.96 16 16 Si 0.98 41.99 29.64 68.60 2.03 44.03 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 2.25 5.45 -2.39 -0.01 2.24 16 24 H 0.04 1.51 7.30 -2.38 -0.02 1.49 16 25 H 0.06 2.20 6.22 -2.39 -0.01 2.19 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.06 2.14 8.10 -2.38 -0.02 2.12 16 29 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 30 H 0.07 2.54 6.10 -2.39 -0.01 2.53 16 31 H 0.06 2.67 6.68 -2.39 -0.02 2.66 16 32 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 Total: -1.00 -64.68 256.59 0.55 -64.14 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.10 Total: 15.13 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.93 Total: 4.25 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -7.48 Total: -92.83 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.04 Total: -34.71 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.03 kcal Total: -64.68 0.55 -64.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442642326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.338 kcal (2) G-P(sol) polarization free energy of solvation -64.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds