Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47029 * 2 1 4 4 C 1.47488 * 111.00085 * 285.97392 * 3 2 1 5 5 C 1.53637 * 87.94967 * 221.34773 * 4 3 2 6 6 C 1.47476 * 111.00138 * 190.00386 * 3 2 1 7 7 H 1.09000 * 113.47972 * 23.87273 * 6 3 2 8 8 C 1.50702 * 113.47851 * 253.47360 * 6 3 2 9 9 O 1.21302 * 119.99536 * 1.09949 * 8 6 3 10 10 N 1.34773 * 120.00697 * 181.10302 * 8 6 3 11 11 C 1.46502 * 119.99514 * 359.97438 * 10 8 6 12 12 C 1.37104 * 120.00482 * 179.97438 * 10 8 6 13 13 H 1.07998 * 119.99777 * 330.53782 * 12 10 8 14 14 C 1.38949 * 119.99883 * 150.52785 * 12 10 8 15 15 N 1.31412 * 120.00105 * 331.70513 * 14 12 10 16 16 Si 1.86800 * 119.99784 * 151.97886 * 14 12 10 17 17 H 1.48501 * 109.47087 * 269.73135 * 16 14 12 18 18 H 1.48497 * 109.46866 * 29.72351 * 16 14 12 19 19 H 1.48492 * 109.47084 * 149.72842 * 16 14 12 20 20 H 1.08999 * 109.46831 * 300.00024 * 1 2 3 21 21 H 1.09006 * 109.47131 * 59.99655 * 1 2 3 22 22 H 1.08996 * 109.46863 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47256 * 240.00609 * 2 1 3 24 24 H 1.08991 * 109.47585 * 120.00245 * 2 1 3 25 25 H 1.08998 * 113.47356 * 336.06390 * 4 3 2 26 26 H 1.08997 * 113.47177 * 106.47107 * 4 3 2 27 27 H 1.08999 * 114.17127 * 272.34485 * 5 4 3 28 28 H 1.09002 * 114.20211 * 139.60707 * 5 4 3 29 29 H 1.09002 * 109.47156 * 274.75385 * 11 10 8 30 30 H 1.09002 * 109.47500 * 34.75270 * 11 10 8 31 31 H 1.09008 * 109.46960 * 154.75458 * 11 10 8 32 32 H 0.96998 * 119.99735 * 354.12235 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8386 2.0097 -1.3237 5 6 3.2306 2.6380 -1.1564 6 6 3.4742 1.4314 -0.2392 7 1 3.8559 0.5563 -0.7650 8 6 4.2749 1.7659 0.9929 9 8 3.7114 1.9461 2.0519 10 7 5.6169 1.8649 0.9183 11 6 6.2974 1.6467 -0.3606 12 6 6.3453 2.1697 2.0392 13 1 5.9071 2.7733 2.8202 14 6 7.6470 1.7018 2.1703 15 7 8.0054 0.5827 1.5821 16 14 8.8856 2.6598 3.1890 17 1 9.5935 3.6340 2.3199 18 1 8.1779 3.3869 4.2732 19 1 9.8699 1.7202 3.7834 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.7836 1.2893 -2.1399 26 1 1.0308 2.7410 -1.3519 27 1 3.2278 3.5979 -0.6400 28 1 3.8334 2.6371 -2.0646 29 1 6.4767 0.5805 -0.4995 30 1 5.6729 2.0190 -1.1727 31 1 7.2491 2.1783 -0.3610 32 1 7.3423 0.0395 1.1282 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442642332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = 8.014445 kcal Electronic energy + Delta-G solvation = -14649.653683 eV Core-core repulsion = 12225.855196 eV Total energy + Delta-G solvation = -2423.798488 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26639 -37.62294 -34.72232 -32.62101 -31.40393 -27.14070 -26.97234 -26.05993 -23.72123 -21.96038 -20.39884 -18.81155 -17.33456 -16.41666 -15.80436 -14.87413 -14.63270 -14.23189 -13.79504 -13.58669 -13.42554 -12.51031 -12.22863 -11.96422 -11.71548 -11.66457 -11.34252 -11.16819 -10.89651 -10.80150 -10.74226 -10.36412 -10.18025 -9.92995 -8.91051 -8.71608 -8.08610 -7.73718 -6.57351 -3.85226 3.33399 3.39195 3.58740 3.79311 4.06962 4.36576 4.66963 4.85669 5.04487 5.11203 5.19719 5.28963 5.43316 5.56289 5.60983 5.74792 5.76969 5.87977 5.91960 6.06132 6.12450 6.19583 6.34847 6.37522 6.57603 6.62429 7.30274 7.99226 8.16809 8.72667 9.01623 9.47737 9.98274 10.68417 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055670 B = 0.008001 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.839785 B = 3498.511669 C = 3606.832697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.015 3.985 3 N -0.440 5.440 4 C -0.005 4.005 5 C -0.131 4.131 6 C 0.015 3.985 7 H 0.084 0.916 8 C 0.465 3.535 9 O -0.559 6.559 10 N -0.458 5.458 11 C 0.086 3.914 12 C -0.402 4.402 13 H 0.087 0.913 14 C 0.008 3.992 15 N -0.878 5.878 16 Si 1.076 2.924 17 H -0.285 1.285 18 H -0.283 1.283 19 H -0.284 1.284 20 H 0.063 0.937 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 0.408 -8.822 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 N -0.163 5.163 4 C -0.134 4.134 5 C -0.169 4.169 6 C -0.098 4.098 7 H 0.102 0.898 8 C 0.252 3.748 9 O -0.440 6.440 10 N -0.180 5.180 11 C -0.059 4.059 12 C -0.529 4.529 13 H 0.105 0.895 14 C -0.199 4.199 15 N -0.513 5.513 16 Si 0.902 3.098 17 H -0.211 1.211 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.446 0.789 -7.195 9.693 hybrid contribution -1.216 -0.782 -1.341 1.972 sum -7.663 0.008 -8.536 11.471 Atomic orbital electron populations 1.21672 0.94750 1.01221 1.02317 1.22626 0.96488 0.91091 1.01141 1.68869 1.05772 1.15186 1.26475 1.23800 0.98449 0.99029 0.92104 1.23126 0.96288 0.98491 0.98979 1.23354 0.91217 0.98871 0.96357 0.89794 1.19734 0.82819 0.83376 0.88849 1.90527 1.69863 1.53284 1.30353 1.43564 1.04306 1.62245 1.07873 1.21649 0.98040 1.00206 0.85984 1.20349 0.98052 1.34427 1.00047 0.89518 1.26355 0.98067 0.95888 0.99634 1.70739 1.39110 1.08907 1.32539 0.83399 0.75101 0.75365 0.75898 1.21113 1.20886 1.21013 0.91756 0.93040 0.92544 0.94619 0.90397 0.91707 0.89759 0.88602 0.90407 0.94131 0.93724 0.91164 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.02 37.16 0.37 -1.42 16 2 C 0.02 0.24 5.54 -3.82 -0.02 0.22 16 3 N -0.44 -7.95 5.84 -237.72 -1.39 -9.34 16 4 C 0.00 -0.07 7.00 -7.48 -0.05 -0.12 16 5 C -0.13 -2.03 7.15 -26.14 -0.19 -2.22 16 6 C 0.02 0.29 2.23 -72.59 -0.16 0.13 16 7 H 0.08 1.49 7.55 -51.93 -0.39 1.09 16 8 C 0.47 11.84 7.20 -10.99 -0.08 11.76 16 9 O -0.56 -16.66 16.43 5.54 0.09 -16.57 16 10 N -0.46 -11.93 2.81 -122.18 -0.34 -12.28 16 11 C 0.09 1.85 8.37 59.85 0.50 2.35 16 12 C -0.40 -11.62 8.95 -14.93 -0.13 -11.76 16 13 H 0.09 2.69 7.66 -52.49 -0.40 2.29 16 14 C 0.01 0.21 4.65 -17.47 -0.08 0.13 16 15 N -0.88 -24.91 12.87 55.50 0.71 -24.20 16 16 Si 1.08 24.34 30.00 -169.99 -5.10 19.24 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.49 7.56 -51.93 -0.39 0.10 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.06 0.76 7.70 -51.93 -0.40 0.36 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.62 8.11 -51.93 -0.42 1.20 16 28 H 0.08 1.00 7.61 -51.93 -0.40 0.61 16 29 H 0.04 0.86 7.01 -51.93 -0.36 0.50 16 30 H 0.04 0.78 5.81 -51.93 -0.30 0.48 16 31 H 0.07 1.58 7.48 -51.92 -0.39 1.19 16 32 H 0.27 7.77 6.61 -40.82 -0.27 7.50 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -33.43 263.72 -6.51 -39.94 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.61 Total: 0.18 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.16 Total: -0.95 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -1.02 Total: -45.81 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.10 Total: 19.24 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.43 -6.51 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442642332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.950 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds