Wall clock time and date at job start Mon Mar 30 2020 02:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47320 * 2 1 4 4 C 1.48308 * 111.10636 * 201.77088 * 3 2 1 5 5 C 1.53935 * 86.18218 * 137.54359 * 4 3 2 6 6 C 1.47962 * 111.00040 * 301.02201 * 3 2 1 7 7 H 1.09000 * 113.75852 * 107.98999 * 6 3 2 8 8 C 1.50707 * 113.75781 * 336.73363 * 6 3 2 9 9 O 1.21279 * 120.00009 * 324.33686 * 8 6 3 10 10 N 1.34772 * 119.99492 * 144.33005 * 8 6 3 11 11 C 1.46511 * 119.99793 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.46907 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00705 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99879 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99725 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47394 * 90.00002 * 16 14 12 18 18 H 1.48508 * 109.47257 * 329.99972 * 16 14 12 19 19 H 1.48503 * 109.47157 * 210.00184 * 16 14 12 20 20 H 1.08995 * 109.46839 * 300.00373 * 1 2 3 21 21 H 1.09003 * 109.46986 * 59.99887 * 1 2 3 22 22 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47107 * 239.99764 * 2 1 3 24 24 H 1.09003 * 109.46986 * 120.00113 * 2 1 3 25 25 H 1.08999 * 113.75790 * 23.22659 * 4 3 2 26 26 H 1.09003 * 113.75551 * 251.86135 * 4 3 2 27 27 H 1.08999 * 113.73335 * 221.92007 * 5 4 3 28 28 H 1.08996 * 113.73292 * 90.63728 * 5 4 3 29 29 H 0.96995 * 120.00747 * 0.02562 * 10 8 6 30 30 H 1.08998 * 109.46840 * 60.00302 * 11 10 8 31 31 H 1.09001 * 109.46555 * 300.00777 * 11 10 8 32 32 H 0.97004 * 119.99473 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4092 1.4601 -0.5132 5 6 2.9458 2.7062 -1.2892 6 6 1.5253 2.1222 -1.1838 7 1 0.7615 2.8643 -0.9515 8 6 1.1476 1.2318 -2.3395 9 8 1.7850 0.2243 -2.5623 10 7 0.1015 1.5550 -3.1253 11 6 -0.2654 0.6897 -4.2492 12 6 -1.4587 1.2714 -4.9622 13 1 -1.8996 2.1935 -4.6135 14 6 -1.9879 0.6262 -6.0599 15 7 -3.0290 1.1341 -6.6825 16 14 -1.2249 -0.9684 -6.6636 17 1 -1.8769 -2.1172 -5.9850 18 1 0.2276 -0.9704 -6.3544 19 1 -1.4187 -1.0855 -8.1312 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.6869 0.6225 -1.1529 26 1 4.1508 1.6730 0.2569 27 1 3.3258 2.7539 -2.3097 28 1 3.0784 3.6388 -0.7410 29 1 -0.4080 2.3609 -2.9473 30 1 -0.5131 -0.3042 -3.8766 31 1 0.5730 0.6194 -4.9423 32 1 -3.4015 0.6799 -7.4545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467581817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:18 Heat of formation + Delta-G solvation = 1.130872 kcal Electronic energy + Delta-G solvation = -14567.756068 eV Core-core repulsion = 12143.659086 eV Total energy + Delta-G solvation = -2424.096982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96244 -37.49847 -34.37796 -32.54567 -32.37648 -28.76119 -26.96432 -26.11541 -22.54233 -21.89119 -20.79112 -19.35226 -17.19598 -16.35036 -15.99210 -15.61048 -15.00500 -14.78612 -14.15273 -13.58784 -13.30903 -12.76215 -12.37862 -12.31285 -12.16502 -11.84499 -11.24147 -11.11255 -10.91078 -10.77812 -10.74700 -10.54321 -10.04834 -9.91495 -9.54022 -8.82561 -8.42926 -8.07075 -6.25471 -4.28159 2.92354 3.22840 3.29753 3.37227 3.82169 4.09137 4.29129 4.56937 4.94283 5.09551 5.17223 5.28175 5.39075 5.48551 5.56485 5.68537 5.81196 5.84266 6.11720 6.15093 6.16783 6.35274 6.52607 6.73408 7.00053 7.06422 7.14762 7.32944 8.05838 8.43604 8.68771 8.82047 9.34103 10.86429 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047233 B = 0.007822 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.661321 B = 3578.949199 C = 3643.204070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 N -0.456 5.456 4 C 0.000 4.000 5 C -0.126 4.126 6 C 0.003 3.997 7 H 0.110 0.890 8 C 0.500 3.500 9 O -0.553 6.553 10 N -0.698 5.698 11 C 0.220 3.780 12 C -0.545 4.545 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.261 1.261 19 H -0.283 1.283 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.398 0.602 30 H 0.021 0.979 31 H 0.025 0.975 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 1.458 10.928 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 N -0.179 5.179 4 C -0.129 4.129 5 C -0.164 4.164 6 C -0.110 4.110 7 H 0.128 0.872 8 C 0.285 3.715 9 O -0.434 6.434 10 N -0.346 5.346 11 C 0.098 3.902 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.186 1.186 19 H -0.208 1.208 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.317 0.915 11.248 14.635 hybrid contribution -0.040 -0.842 -1.069 1.361 sum 9.277 0.074 10.180 13.773 Atomic orbital electron populations 1.21830 0.95045 1.02012 1.02093 1.23085 0.96451 0.91286 1.03505 1.69000 1.04056 1.13430 1.31412 1.24035 0.92539 0.98244 0.98081 1.23187 0.93257 0.98565 1.01429 1.23366 0.99726 0.97339 0.90540 0.87240 1.20507 0.81122 0.86364 0.83494 1.90525 1.53597 1.27566 1.71670 1.46261 1.30267 1.27539 1.30506 1.19509 0.96209 0.90350 0.84104 1.21082 1.12695 1.11113 1.13412 0.90180 1.24795 0.94434 0.97576 0.95762 1.69879 1.22583 1.39636 1.20695 0.86824 0.80803 0.83791 0.78300 1.19849 1.18580 1.20822 0.92482 0.92199 0.92273 0.89181 0.91227 0.89779 0.89701 0.90605 0.88551 0.76795 0.96158 0.95682 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.61 37.16 0.36 -1.96 16 2 C -0.02 -0.24 5.42 -3.82 -0.02 -0.26 16 3 N -0.46 -6.58 6.36 -230.96 -1.47 -8.05 16 4 C 0.00 0.00 7.60 -2.57 -0.02 -0.02 16 5 C -0.13 -1.56 7.87 -25.79 -0.20 -1.76 16 6 C 0.00 0.04 3.99 -67.80 -0.27 -0.23 16 7 H 0.11 1.42 8.12 -51.93 -0.42 0.99 16 8 C 0.50 9.27 4.45 -10.98 -0.05 9.22 16 9 O -0.55 -11.80 12.75 5.56 0.07 -11.73 16 10 N -0.70 -13.89 5.32 -61.47 -0.33 -14.22 16 11 C 0.22 5.34 4.50 -5.19 -0.02 5.31 16 12 C -0.55 -14.81 9.83 -34.44 -0.34 -15.15 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 16 Si 0.88 21.28 27.47 -169.99 -4.67 16.62 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 1.02 5.41 -51.93 -0.28 0.74 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.09 1.61 4.69 -51.92 -0.24 1.37 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.23 6.77 -51.93 -0.35 0.88 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.40 7.06 8.30 -40.82 -0.34 6.72 16 30 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 31 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -30.31 258.36 -6.91 -37.22 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.52 Total: 4.52 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.67 Total: -2.74 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -1.02 Total: -47.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.31 -6.91 -37.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.352 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds