Wall clock time and date at job start Mon Mar 30 2020 02:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.47320 * 2 1 4 4 C 1.48308 * 111.10636 * 201.77088 * 3 2 1 5 5 C 1.53935 * 86.18218 * 137.54359 * 4 3 2 6 6 C 1.47962 * 111.00040 * 301.02201 * 3 2 1 7 7 H 1.09000 * 113.75852 * 107.98999 * 6 3 2 8 8 C 1.50707 * 113.75781 * 336.73363 * 6 3 2 9 9 O 1.21279 * 120.00009 * 324.33686 * 8 6 3 10 10 N 1.34772 * 119.99492 * 144.33005 * 8 6 3 11 11 C 1.46511 * 119.99793 * 179.97438 * 10 8 6 12 12 C 1.50694 * 109.46907 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00705 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99879 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00186 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99725 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47394 * 90.00002 * 16 14 12 18 18 H 1.48508 * 109.47257 * 329.99972 * 16 14 12 19 19 H 1.48503 * 109.47157 * 210.00184 * 16 14 12 20 20 H 1.08995 * 109.46839 * 300.00373 * 1 2 3 21 21 H 1.09003 * 109.46986 * 59.99887 * 1 2 3 22 22 H 1.09001 * 109.47323 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.47107 * 239.99764 * 2 1 3 24 24 H 1.09003 * 109.46986 * 120.00113 * 2 1 3 25 25 H 1.08999 * 113.75790 * 23.22659 * 4 3 2 26 26 H 1.09003 * 113.75551 * 251.86135 * 4 3 2 27 27 H 1.08999 * 113.73335 * 221.92007 * 5 4 3 28 28 H 1.08996 * 113.73292 * 90.63728 * 5 4 3 29 29 H 0.96995 * 120.00747 * 0.02562 * 10 8 6 30 30 H 1.08998 * 109.46840 * 60.00302 * 11 10 8 31 31 H 1.09001 * 109.46555 * 300.00777 * 11 10 8 32 32 H 0.97004 * 119.99473 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4092 1.4601 -0.5132 5 6 2.9458 2.7062 -1.2892 6 6 1.5253 2.1222 -1.1838 7 1 0.7615 2.8643 -0.9515 8 6 1.1476 1.2318 -2.3395 9 8 1.7850 0.2243 -2.5623 10 7 0.1015 1.5550 -3.1253 11 6 -0.2654 0.6897 -4.2492 12 6 -1.4587 1.2714 -4.9622 13 1 -1.8996 2.1935 -4.6135 14 6 -1.9879 0.6262 -6.0599 15 7 -3.0290 1.1341 -6.6825 16 14 -1.2249 -0.9684 -6.6636 17 1 -1.8769 -2.1172 -5.9850 18 1 0.2276 -0.9704 -6.3544 19 1 -1.4187 -1.0855 -8.1312 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.6869 0.6225 -1.1529 26 1 4.1508 1.6730 0.2569 27 1 3.3258 2.7539 -2.3097 28 1 3.0784 3.6388 -0.7410 29 1 -0.4080 2.3609 -2.9473 30 1 -0.5131 -0.3042 -3.8766 31 1 0.5730 0.6194 -4.9423 32 1 -3.4015 0.6799 -7.4545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467581817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:18 Heat of formation + Delta-G solvation = -23.159405 kcal Electronic energy + Delta-G solvation = -14568.809373 eV Core-core repulsion = 12143.659086 eV Total energy + Delta-G solvation = -2425.150287 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.24174 -38.93329 -36.16553 -34.46812 -33.65274 -30.55348 -28.24516 -27.38607 -24.33528 -23.04360 -22.33681 -20.81830 -18.95654 -17.87345 -17.38372 -16.98038 -16.62903 -16.21829 -15.68662 -15.14030 -14.86810 -14.53667 -14.01929 -13.75224 -13.48274 -13.16530 -12.90341 -12.73472 -12.40468 -12.05606 -11.95118 -11.87841 -11.69228 -11.68506 -11.29095 -10.94071 -10.02353 -9.50179 -8.42344 -6.49624 1.29902 1.32492 1.44068 1.49947 2.24953 2.34073 2.92093 2.96189 3.48693 3.72771 4.00075 4.04444 4.23776 4.36477 4.49840 4.59293 4.74136 4.77740 4.85599 4.94258 4.96252 4.98815 5.05869 5.22982 5.24186 5.34058 5.50469 5.89895 6.05487 6.51332 6.76611 7.11890 7.31797 8.72408 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047233 B = 0.007822 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.661321 B = 3578.949199 C = 3643.204070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 N -0.450 5.450 4 C -0.002 4.002 5 C -0.114 4.114 6 C 0.000 4.000 7 H 0.131 0.869 8 C 0.502 3.498 9 O -0.581 6.581 10 N -0.700 5.700 11 C 0.235 3.765 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.027 3.973 15 N -0.930 5.930 16 Si 0.937 3.063 17 H -0.266 1.266 18 H -0.261 1.261 19 H -0.272 1.272 20 H 0.073 0.927 21 H 0.038 0.962 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.408 0.592 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.368 1.685 12.200 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 N -0.173 5.173 4 C -0.131 4.131 5 C -0.152 4.152 6 C -0.112 4.112 7 H 0.149 0.851 8 C 0.289 3.711 9 O -0.463 6.463 10 N -0.350 5.350 11 C 0.111 3.889 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.185 1.185 19 H -0.197 1.197 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.244 0.756 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.500 1.162 12.545 16.401 hybrid contribution -0.399 -0.875 -1.398 1.697 sum 10.102 0.287 11.147 15.046 Atomic orbital electron populations 1.21813 0.95086 1.02072 1.01797 1.23012 0.96422 0.91762 1.02942 1.69052 1.04890 1.12670 1.30726 1.24094 0.92379 0.97891 0.98689 1.23263 0.90785 0.99540 1.01595 1.23427 1.01870 0.97089 0.88851 0.85122 1.21226 0.79827 0.86319 0.83762 1.90528 1.54305 1.29036 1.72456 1.46109 1.31299 1.27576 1.29966 1.19071 0.94421 0.90409 0.85004 1.21291 1.13351 1.10405 1.13544 0.92254 1.25597 0.94847 1.00818 0.96074 1.69982 1.24025 1.41339 1.21523 0.85869 0.79860 0.79954 0.78266 1.19075 1.18489 1.19725 0.90798 0.94259 0.92179 0.91948 0.89551 0.91915 0.86926 0.91150 0.85263 0.75609 0.97206 0.96942 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.61 71.98 0.69 -3.68 16 2 C -0.01 -0.39 5.42 86.30 0.47 0.08 16 3 N -0.45 -11.84 6.36 -884.61 -5.63 -17.47 16 4 C 0.00 -0.05 7.60 86.34 0.66 0.61 16 5 C -0.11 -2.46 7.87 31.24 0.25 -2.21 16 6 C 0.00 0.01 3.99 44.27 0.18 0.18 16 7 H 0.13 2.99 8.12 -2.39 -0.02 2.97 16 8 C 0.50 18.22 4.45 87.66 0.39 18.61 16 9 O -0.58 -24.78 12.75 -3.02 -0.04 -24.82 16 10 N -0.70 -27.72 5.32 -466.77 -2.48 -30.20 16 11 C 0.23 11.41 4.50 85.63 0.38 11.80 16 12 C -0.55 -30.15 9.83 25.60 0.25 -29.89 16 13 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 14 C 0.03 1.53 5.47 84.66 0.46 1.99 16 15 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 16 Si 0.94 43.91 27.47 68.60 1.88 45.80 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.04 1.30 5.41 -2.39 -0.01 1.28 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 2.21 4.69 -2.38 -0.01 2.20 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.06 1.77 6.77 -2.39 -0.02 1.75 16 26 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 28 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.41 14.33 8.30 -92.71 -0.77 13.56 16 30 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.75 258.36 -1.95 -66.70 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.29 Total: 17.61 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 3.73 Total: -2.51 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -7.81 Total: -102.78 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.04 Total: -24.82 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -64.75 -1.95 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.541 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds