Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47705 * 2 1 4 4 C 1.52997 * 109.47482 * 174.99884 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 3 7 7 C 1.52997 * 109.47415 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47045 * 300.00068 * 7 6 5 9 9 O 1.42900 * 109.47084 * 59.99851 * 7 6 5 10 10 C 1.50699 * 109.47265 * 180.02562 * 7 6 5 11 11 H 1.08000 * 119.99792 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00084 * 180.02562 * 10 7 6 13 13 N 1.31515 * 119.99944 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00336 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47142 * 59.99663 * 14 12 10 16 16 H 1.48492 * 109.47444 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47042 * 300.00140 * 14 12 10 18 18 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 19 19 C 1.52999 * 109.46961 * 295.00245 * 3 2 1 20 20 H 1.09000 * 109.46929 * 59.99736 * 1 2 3 21 21 H 1.09000 * 109.47812 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46974 * 300.00556 * 1 2 3 23 23 H 1.09001 * 109.46974 * 239.99443 * 2 1 3 24 24 H 1.09002 * 109.46661 * 119.99810 * 2 1 3 25 25 H 1.09002 * 109.47103 * 54.99637 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 31 31 H 0.96700 * 113.99855 * 60.00403 * 9 7 6 32 32 H 0.97006 * 120.00331 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47153 * 60.00231 * 18 6 5 34 34 H 1.09001 * 109.47289 * 180.02562 * 18 6 5 35 35 H 1.09000 * 109.47486 * 59.99547 * 19 3 2 36 36 H 1.09002 * 109.46716 * 299.99630 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5649 1.4441 0.1257 5 6 4.0749 2.8866 0.1264 6 6 3.6702 3.5713 -1.1807 7 6 4.1807 5.0135 -1.1804 8 1 3.7464 5.5525 -0.3384 9 8 5.6049 5.0147 -1.0631 10 6 3.7816 5.6880 -2.4676 11 1 3.2203 5.1423 -3.2116 12 6 4.1339 7.0013 -2.6958 13 7 4.8178 7.6656 -1.7899 14 14 3.6385 7.8376 -4.2909 15 1 2.1584 7.8371 -4.4113 16 1 4.1341 9.2374 -4.2907 17 1 4.2287 7.1032 -5.4389 18 6 2.1454 3.5695 -1.3065 19 6 1.6353 2.1264 -1.3073 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3635 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 1.6055 1.9815 0.8418 26 1 3.9995 0.9050 -0.7160 27 1 3.8532 0.9568 1.0572 28 1 3.6403 3.4253 0.9683 29 1 5.1613 2.8878 0.2155 30 1 4.1048 3.0325 -2.0227 31 1 6.0590 4.5515 -1.7803 32 1 5.0660 8.5895 -1.9505 33 1 1.7108 4.1082 -0.4645 34 1 1.8571 4.0568 -2.2379 35 1 0.5490 2.1252 -1.3969 36 1 2.0700 1.5873 -2.1491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535834006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -115.467573 kcal Electronic energy + Delta-G solvation = -14805.623130 eV Core-core repulsion = 12480.010404 eV Total energy + Delta-G solvation = -2325.612726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09552 -37.47338 -34.46943 -34.23980 -31.70571 -30.44972 -28.04658 -25.17095 -23.55236 -22.75210 -21.07569 -20.60683 -18.88978 -16.75387 -16.58309 -16.20626 -15.51671 -15.13210 -14.85475 -14.71000 -14.36735 -13.81871 -13.65874 -13.23563 -13.02491 -12.84377 -12.75579 -12.48317 -12.33273 -12.04405 -11.92657 -11.75473 -11.53573 -11.32200 -11.05640 -10.92753 -10.68653 -10.49355 -9.89985 -8.09998 -6.34134 1.39679 1.41232 1.49224 2.40169 3.15091 3.81910 3.89257 4.00192 4.21640 4.25367 4.49463 4.52392 4.58564 4.67752 4.73832 4.76291 4.82657 4.92437 4.93534 5.15347 5.19344 5.23281 5.23772 5.33949 5.39379 5.43319 5.48302 5.55161 5.60845 5.69881 5.76659 5.92107 6.16913 6.77718 7.36871 7.58827 8.94340 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.045354 B = 0.007693 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.223098 B = 3638.603923 C = 4094.677828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.104 4.104 5 C -0.106 4.106 6 C -0.097 4.097 7 C 0.230 3.770 8 H 0.011 0.989 9 O -0.583 6.583 10 C -0.574 4.574 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.905 5.905 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.100 4.100 19 C -0.105 4.105 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.355 0.645 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -14.084 1.548 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.104 4.104 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.116 4.116 7 C 0.173 3.827 8 H 0.029 0.971 9 O -0.387 6.387 10 C -0.611 4.611 11 H 0.080 0.920 12 C -0.181 4.181 13 N -0.543 5.543 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.138 4.138 19 C -0.143 4.143 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.199 0.801 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.573 -13.580 2.155 15.240 hybrid contribution 0.102 0.840 -1.155 1.431 sum -6.471 -12.740 1.000 14.324 Atomic orbital electron populations 1.21819 0.95511 1.01894 1.01814 1.21525 0.96227 0.95132 1.02221 1.21177 0.95185 0.96528 0.97482 1.21546 0.95509 0.95235 1.01896 1.21457 0.99997 0.96204 0.96658 1.21641 0.96312 0.96521 0.97091 1.19323 0.78237 0.90866 0.94319 0.97119 1.86482 1.21737 1.80119 1.50380 1.22066 1.36839 0.97603 1.04639 0.92041 1.25933 0.94225 0.98204 0.99698 1.70224 1.37970 1.10250 1.35873 0.85678 0.78849 0.77354 0.80099 1.19376 1.21198 1.19182 1.21381 0.94704 0.96960 1.00751 1.21614 1.00534 0.94395 0.97728 0.92753 0.91881 0.92976 0.91806 0.91426 0.92138 0.91894 0.91203 0.94071 0.92963 0.92631 0.80084 0.93206 0.94042 0.93067 0.91186 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.67 71.98 0.70 -2.02 16 2 C -0.11 -2.22 5.40 30.59 0.17 -2.06 16 3 C -0.09 -2.14 2.19 -10.80 -0.02 -2.17 16 4 C -0.10 -2.83 5.20 30.59 0.16 -2.67 16 5 C -0.11 -3.75 5.06 30.60 0.15 -3.59 16 6 C -0.10 -3.94 1.92 -10.79 -0.02 -3.96 16 7 C 0.23 12.01 2.41 29.85 0.07 12.09 16 8 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 9 O -0.58 -31.18 12.06 -148.98 -1.80 -32.97 16 10 C -0.57 -31.82 8.03 25.60 0.21 -31.61 16 11 H 0.06 3.28 6.71 -2.91 -0.02 3.26 16 12 C 0.02 1.19 5.40 84.65 0.46 1.65 16 13 N -0.91 -55.59 12.84 21.44 0.28 -55.32 16 14 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 C -0.10 -3.73 4.95 30.61 0.15 -3.57 16 19 C -0.11 -2.97 4.96 30.61 0.15 -2.81 16 20 H 0.05 1.00 6.56 -2.39 -0.02 0.98 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.93 7.68 -2.39 -0.02 1.91 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 32 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 2.07 6.62 -2.39 -0.02 2.05 16 35 H 0.07 1.77 6.56 -2.39 -0.02 1.76 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -63.72 280.14 3.04 -60.69 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.36 Total: 22.23 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 2.17 Total: -40.73 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.80 Total: -32.97 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.72 3.04 -60.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535834006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.780 kcal (2) G-P(sol) polarization free energy of solvation -63.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds