Wall clock time and date at job start Mon Mar 30 2020 03:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 C 1.53005 * 109.46833 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47210 * 300.00246 * 7 6 5 9 9 O 1.42900 * 109.46957 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47291 * 60.00336 * 7 6 5 11 11 H 1.07999 * 119.99878 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99794 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00173 * 0.02562 * 12 10 7 14 14 Si 1.86807 * 119.99732 * 179.97438 * 12 10 7 15 15 H 1.48492 * 109.47021 * 89.99971 * 14 12 10 16 16 H 1.48501 * 109.46696 * 210.00211 * 14 12 10 17 17 H 1.48505 * 109.46982 * 329.99899 * 14 12 10 18 18 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 19 19 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 26 26 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 27 27 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 29 29 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 30 30 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 31 31 H 0.96706 * 114.00139 * 299.99922 * 9 7 6 32 32 H 0.97005 * 120.00020 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.46575 * 179.97438 * 18 6 5 34 34 H 1.08992 * 109.47256 * 59.99679 * 18 6 5 35 35 H 1.09002 * 109.47069 * 179.97438 * 19 3 2 36 36 H 1.08994 * 109.47518 * 299.99758 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 6 4.3803 0.6155 -3.5451 8 1 4.0170 -0.4122 -3.5455 9 8 5.8044 0.6168 -3.4274 10 6 3.9816 1.2897 -4.8326 11 1 3.3554 2.1693 -4.8101 12 6 4.4164 0.7836 -6.0392 13 7 5.1785 -0.2878 -6.0665 14 14 3.9216 1.6189 -7.6351 15 1 4.9301 2.6505 -7.9872 16 1 3.8476 0.6082 -8.7205 17 1 2.5938 2.2621 -7.4662 18 6 4.1749 0.6877 -1.0558 19 6 3.5648 1.4444 0.1258 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.6054 1.9816 0.8418 26 1 0.5490 2.1252 -1.3970 27 1 1.9990 3.1541 -1.3076 28 1 1.9574 1.8574 -3.4204 29 1 1.8820 0.3422 -2.4889 30 1 4.1335 2.3994 -2.3633 31 1 6.1978 1.5002 -3.4202 32 1 5.4847 -0.6436 -6.9154 33 1 5.2613 0.6886 -0.9665 34 1 3.8116 -0.3399 -1.0558 35 1 3.9282 2.4720 0.1253 36 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535834009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:01 Heat of formation + Delta-G solvation = -92.439426 kcal Electronic energy + Delta-G solvation = -15053.237241 eV Core-core repulsion = 12728.623090 eV Total energy + Delta-G solvation = -2324.614151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.00044 -35.62091 -32.50259 -32.07426 -30.37761 -29.16258 -26.18409 -23.52012 -22.46654 -21.76325 -19.89880 -17.94021 -16.75829 -15.45139 -14.74600 -14.51476 -14.42291 -13.72673 -13.29460 -13.20795 -12.76094 -12.10952 -11.94393 -11.87677 -11.60233 -11.40751 -11.10066 -10.90323 -10.73051 -10.62034 -10.45610 -10.23355 -9.97535 -9.82690 -9.50032 -9.36540 -8.71091 -8.50345 -7.92614 -5.93863 -4.10463 3.30278 3.37463 3.39934 4.43607 5.02572 5.09634 5.20363 5.32574 5.49845 5.60980 5.69437 5.82173 5.90616 5.94618 6.04778 6.09777 6.11604 6.17692 6.24253 6.36899 6.45992 6.49721 6.57827 6.59174 6.76012 6.78477 6.92973 7.08522 7.18197 7.23408 7.83978 7.95795 8.29263 8.92536 9.46760 9.66509 11.10338 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.008627 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.108087 B = 3244.944522 C = 3563.394894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.107 4.107 7 C 0.232 3.768 8 H 0.052 0.948 9 O -0.567 6.567 10 C -0.564 4.564 11 H 0.057 0.943 12 C 0.077 3.923 13 N -0.862 5.862 14 Si 0.884 3.116 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.111 4.111 19 C -0.113 4.113 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.343 0.657 32 H 0.259 0.741 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 2.938 10.443 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.103 4.103 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.126 4.126 7 C 0.175 3.825 8 H 0.069 0.931 9 O -0.369 6.369 10 C -0.602 4.602 11 H 0.075 0.925 12 C -0.129 4.129 13 N -0.499 5.499 14 Si 0.712 3.288 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.148 4.148 19 C -0.150 4.150 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.186 0.814 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.223 2.133 10.344 12.259 hybrid contribution -0.240 1.067 -0.995 1.479 sum -6.463 3.200 9.349 11.807 Atomic orbital electron populations 1.21813 0.96533 1.01045 1.01505 1.21673 0.95265 0.96960 1.02242 1.21112 0.95740 0.95893 0.97525 1.21638 0.99505 0.99024 0.95123 1.21457 0.95556 0.99998 0.97061 1.21845 0.95330 0.99520 0.95938 1.19403 0.78104 0.95532 0.89450 0.93054 1.86550 1.22989 1.31010 1.96390 1.21731 1.33242 1.13561 0.91690 0.92527 1.25063 0.94323 0.94500 0.98980 1.70080 1.32983 1.21236 1.25559 0.86746 0.78998 0.79374 0.83686 1.20656 1.21234 1.19885 1.21553 1.00049 0.98984 0.94225 1.21583 0.94847 1.00285 0.98329 0.93280 0.92374 0.93440 0.92788 0.90679 0.92499 0.92746 0.92796 0.91283 0.92475 0.92865 0.81387 0.93161 0.92178 0.92558 0.92680 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 37.16 0.36 -1.44 16 2 C -0.12 -1.67 4.70 -26.73 -0.13 -1.79 16 3 C -0.08 -1.17 2.66 -90.62 -0.24 -1.41 16 4 C -0.12 -1.74 5.21 -26.73 -0.14 -1.88 16 5 C -0.10 -1.91 4.68 -26.73 -0.13 -2.03 16 6 C -0.11 -2.16 1.92 -90.61 -0.17 -2.34 16 7 C 0.23 5.86 2.41 -27.88 -0.07 5.79 16 8 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 9 O -0.57 -14.72 12.06 -35.23 -0.42 -15.14 16 10 C -0.56 -15.38 8.03 -34.44 -0.28 -15.66 16 11 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 12 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 13 N -0.86 -25.81 12.84 55.43 0.71 -25.10 16 14 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 18 C -0.11 -1.97 4.79 -26.73 -0.13 -2.09 16 19 C -0.11 -1.66 5.45 -26.73 -0.15 -1.81 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.15 4.83 -51.93 -0.25 0.90 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.76 6.57 -51.93 -0.34 0.41 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.39 6.62 -51.92 -0.34 1.05 16 29 H 0.06 1.07 6.32 -51.93 -0.33 0.74 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.34 7.93 9.04 45.56 0.41 8.35 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 34 H 0.06 1.02 6.54 -51.93 -0.34 0.68 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 273.12 15.07 4.12 4.12 Total: -1.00 -29.44 273.12 -7.00 -36.44 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.22 Total: 5.95 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.16 Total: -22.59 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.71 Total: -25.10 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.42 Total: -15.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.44 -7.00 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535834009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.999 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds