Wall clock time and date at job start Mon Mar 30 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 C 1.53005 * 109.46833 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47210 * 300.00246 * 7 6 5 9 9 O 1.42900 * 109.46957 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47291 * 60.00336 * 7 6 5 11 11 H 1.07999 * 119.99878 * 359.97438 * 10 7 6 12 12 C 1.37875 * 119.99794 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00173 * 0.02562 * 12 10 7 14 14 Si 1.86807 * 119.99732 * 179.97438 * 12 10 7 15 15 H 1.48492 * 109.47021 * 89.99971 * 14 12 10 16 16 H 1.48501 * 109.46696 * 210.00211 * 14 12 10 17 17 H 1.48505 * 109.46982 * 329.99899 * 14 12 10 18 18 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 19 19 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 26 26 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 27 27 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 29 29 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 30 30 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 31 31 H 0.96706 * 114.00139 * 299.99922 * 9 7 6 32 32 H 0.97005 * 120.00020 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.46575 * 179.97438 * 18 6 5 34 34 H 1.08992 * 109.47256 * 59.99679 * 18 6 5 35 35 H 1.09002 * 109.47069 * 179.97438 * 19 3 2 36 36 H 1.08994 * 109.47518 * 299.99758 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 6 4.3803 0.6155 -3.5451 8 1 4.0170 -0.4122 -3.5455 9 8 5.8044 0.6168 -3.4274 10 6 3.9816 1.2897 -4.8326 11 1 3.3554 2.1693 -4.8101 12 6 4.4164 0.7836 -6.0392 13 7 5.1785 -0.2878 -6.0665 14 14 3.9216 1.6189 -7.6351 15 1 4.9301 2.6505 -7.9872 16 1 3.8476 0.6082 -8.7205 17 1 2.5938 2.2621 -7.4662 18 6 4.1749 0.6877 -1.0558 19 6 3.5648 1.4444 0.1258 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.6054 1.9816 0.8418 26 1 0.5490 2.1252 -1.3970 27 1 1.9990 3.1541 -1.3076 28 1 1.9574 1.8574 -3.4204 29 1 1.8820 0.3422 -2.4889 30 1 4.1335 2.3994 -2.3633 31 1 6.1978 1.5002 -3.4202 32 1 5.4847 -0.6436 -6.9154 33 1 5.2613 0.6886 -0.9665 34 1 3.8116 -0.3399 -1.0558 35 1 3.9282 2.4720 0.1253 36 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535834009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:00 Heat of formation + Delta-G solvation = -110.956039 kcal Electronic energy + Delta-G solvation = -15054.040181 eV Core-core repulsion = 12728.623090 eV Total energy + Delta-G solvation = -2325.417092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38858 -37.46456 -34.24758 -33.90973 -31.75777 -30.52367 -28.09914 -24.98399 -23.92881 -23.12863 -21.59505 -19.29907 -18.77943 -16.86750 -16.59272 -16.38183 -15.78490 -15.23746 -14.86307 -14.67199 -14.20234 -13.71040 -13.44173 -13.18268 -13.05689 -12.97396 -12.81118 -12.54455 -12.40632 -12.02623 -11.96122 -11.70532 -11.44672 -11.28170 -10.97263 -10.78478 -10.69710 -10.48249 -9.88052 -8.10049 -6.33852 1.39081 1.39480 1.50211 2.39888 3.15080 3.85031 3.90326 4.01745 4.24265 4.34637 4.42838 4.54900 4.57542 4.67611 4.75243 4.81101 4.82071 4.92820 5.00097 5.13143 5.19314 5.21361 5.23782 5.36280 5.39897 5.43671 5.52465 5.59886 5.65661 5.70300 5.79230 5.94294 6.17576 6.78209 7.37071 7.59205 8.94353 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.008627 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.108087 B = 3244.944522 C = 3563.394894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.109 4.109 5 C -0.099 4.099 6 C -0.096 4.096 7 C 0.231 3.769 8 H 0.011 0.989 9 O -0.584 6.584 10 C -0.572 4.572 11 H 0.061 0.939 12 C 0.020 3.980 13 N -0.905 5.905 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.264 1.264 18 C -0.105 4.105 19 C -0.107 4.107 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.354 0.646 32 H 0.259 0.741 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 4.401 11.631 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.099 4.099 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.115 4.115 7 C 0.173 3.827 8 H 0.029 0.971 9 O -0.387 6.387 10 C -0.610 4.610 11 H 0.079 0.921 12 C -0.181 4.181 13 N -0.543 5.543 14 Si 0.779 3.221 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.189 1.189 18 C -0.143 4.143 19 C -0.144 4.144 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.199 0.801 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.470 3.613 11.543 14.216 hybrid contribution 0.175 0.570 -1.354 1.479 sum -7.295 4.182 10.189 13.211 Atomic orbital electron populations 1.21790 0.95190 1.01618 1.02042 1.21657 0.96486 0.96634 1.01445 1.21128 0.95062 0.96171 0.97549 1.21586 1.00253 0.98709 0.94045 1.21374 0.94426 0.99879 0.97988 1.21631 0.96211 0.98645 0.95008 1.19322 0.78024 0.93905 0.91407 0.97108 1.86483 1.23596 1.32131 1.96534 1.22093 1.32705 1.13448 0.92718 0.92108 1.25930 0.94332 0.95098 1.02745 1.70228 1.34645 1.23010 1.26403 0.85636 0.79029 0.78281 0.79108 1.19901 1.21111 1.18850 1.21465 0.99529 0.98771 0.94509 1.21549 0.95370 1.00235 0.97277 0.92842 0.92994 0.91639 0.91717 0.93403 0.89770 0.91117 0.92217 0.93467 0.93453 0.92859 0.80124 0.93237 0.93324 0.93595 0.91941 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.67 71.98 0.70 -2.46 16 2 C -0.12 -3.09 4.70 30.60 0.14 -2.95 16 3 C -0.08 -1.98 2.66 -10.79 -0.03 -2.01 16 4 C -0.11 -3.02 5.21 30.59 0.16 -2.86 16 5 C -0.10 -3.65 4.68 30.60 0.14 -3.50 16 6 C -0.10 -3.89 1.92 -10.79 -0.02 -3.91 16 7 C 0.23 12.02 2.41 29.85 0.07 12.09 16 8 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 9 O -0.58 -31.18 12.06 -148.98 -1.80 -32.97 16 10 C -0.57 -31.70 8.03 25.60 0.21 -31.49 16 11 H 0.06 3.25 6.71 -2.91 -0.02 3.23 16 12 C 0.02 1.16 5.40 84.66 0.46 1.62 16 13 N -0.90 -55.53 12.84 21.45 0.28 -55.25 16 14 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 C -0.11 -3.70 4.79 30.60 0.15 -3.56 16 19 C -0.11 -2.86 5.45 30.59 0.17 -2.69 16 20 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.05 1.15 6.57 -2.39 -0.02 1.14 16 22 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.45 4.83 -2.39 -0.01 1.44 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.76 6.57 -2.39 -0.02 1.75 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.91 6.62 -2.38 -0.02 1.89 16 29 H 0.05 1.81 6.32 -2.39 -0.02 1.80 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.35 16.73 9.04 -74.05 -0.67 16.06 16 32 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 33 H 0.05 1.80 7.68 -2.39 -0.02 1.78 16 34 H 0.05 1.69 6.54 -2.39 -0.02 1.68 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.78 273.12 3.02 -60.76 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.38 Total: 23.02 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 2.14 Total: -41.74 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.80 Total: -32.97 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.78 3.02 -60.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535834009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.197 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds