Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99961 * 2 1 4 4 N 1.34778 * 120.00226 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64813 * 355.10157 * 4 2 1 6 6 C 1.54904 * 104.83299 * 155.83415 * 5 4 2 7 7 C 1.55159 * 101.58056 * 37.01150 * 6 5 4 8 8 C 1.47023 * 125.64860 * 174.79489 * 4 2 1 9 9 H 1.08994 * 109.88219 * 300.51389 * 8 4 2 10 10 C 1.53000 * 109.88251 * 61.68020 * 8 4 2 11 11 N 1.46505 * 109.47144 * 185.23040 * 10 8 4 12 12 C 1.36931 * 119.99882 * 185.01473 * 11 10 8 13 13 H 1.07998 * 120.00484 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99814 * 180.02562 * 12 11 10 15 15 N 1.31609 * 119.99920 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99981 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46944 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47055 * 120.00029 * 16 14 12 19 19 H 1.48495 * 109.47452 * 240.00193 * 16 14 12 20 20 H 1.08995 * 109.47074 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47516 * 239.99834 * 1 2 3 22 22 H 1.09005 * 109.46883 * 120.00019 * 1 2 3 23 23 H 1.09001 * 110.36789 * 274.67771 * 5 4 2 24 24 H 1.09002 * 110.36528 * 36.99792 * 5 4 2 25 25 H 1.08997 * 111.00658 * 155.08787 * 6 5 4 26 26 H 1.09003 * 111.00776 * 278.94328 * 6 5 4 27 27 H 1.08997 * 110.72298 * 82.86231 * 7 6 5 28 28 H 1.09000 * 110.72123 * 206.13515 * 7 6 5 29 29 H 1.09000 * 109.47246 * 305.23397 * 10 8 4 30 30 H 1.09007 * 109.47080 * 65.23070 * 10 8 4 31 31 H 0.96998 * 119.99600 * 5.01921 * 11 10 8 32 32 H 0.97008 * 120.00274 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5769 -2.5081 0.1034 6 6 2.6112 -3.4600 -0.5474 7 6 3.9506 -2.8258 -0.0878 8 6 3.6397 -1.3143 -0.1078 9 1 3.9883 -0.8746 -1.0422 10 6 4.3213 -0.6300 1.0788 11 7 5.7746 -0.6730 0.8986 12 6 6.6011 -0.2111 1.8878 13 1 6.1818 0.1847 2.8010 14 6 7.9781 -0.2514 1.7168 15 7 8.4891 -0.7331 0.6037 16 14 9.1056 0.3795 3.0659 17 1 8.2886 0.8661 4.2066 18 1 9.9912 -0.7204 3.5255 19 1 9.9334 1.4939 2.5384 20 1 -0.3633 1.0276 -0.0005 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3633 -0.5139 -0.8900 23 1 1.4210 -2.7748 1.1488 24 1 0.6339 -2.5423 -0.4423 25 1 2.5062 -4.4739 -0.1613 26 1 2.5252 -3.4465 -1.6339 27 1 4.2089 -3.1568 0.9181 28 1 4.7501 -3.0620 -0.7899 29 1 3.9930 0.4077 1.1374 30 1 4.0539 -1.1482 1.9998 31 1 6.1512 -1.0288 0.0785 32 1 9.4514 -0.7617 0.4844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568131929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -26.042489 kcal Electronic energy + Delta-G solvation = -14349.738598 eV Core-core repulsion = 11924.463291 eV Total energy + Delta-G solvation = -2425.275307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90301 -37.25923 -34.46273 -31.94234 -31.25355 -29.53602 -28.29247 -25.01611 -23.08566 -21.96449 -20.66930 -18.80729 -17.15401 -16.58801 -16.23364 -14.96509 -14.49011 -14.31403 -13.67124 -13.38973 -13.16033 -12.84556 -12.71698 -12.42943 -12.12090 -12.08634 -11.39801 -11.10265 -10.88258 -10.80643 -10.51844 -10.39217 -9.97546 -9.73288 -9.52027 -8.78121 -8.38764 -6.83339 -5.70004 -2.97667 2.84786 3.18071 3.48254 3.53979 3.56499 4.59231 4.64239 4.68458 4.98435 5.06313 5.24278 5.34223 5.41757 5.45045 5.61356 5.64795 5.79301 5.83909 5.96105 6.10292 6.14218 6.23130 6.46520 6.61670 6.87822 7.10274 7.75640 7.79192 8.40060 8.49590 9.60077 10.17493 10.53245 11.53345 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042394 B = 0.007556 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.312254 B = 3704.816014 C = 4137.739356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.519 3.481 3 O -0.535 6.535 4 N -0.615 5.615 5 C 0.101 3.899 6 C -0.136 4.136 7 C -0.120 4.120 8 C 0.129 3.871 9 H 0.074 0.926 10 C 0.145 3.855 11 N -0.729 5.729 12 C -0.232 4.232 13 H 0.070 0.930 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.907 3.093 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.019 0.981 31 H 0.383 0.617 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 -6.521 -2.599 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.307 3.693 3 O -0.412 6.412 4 N -0.351 5.351 5 C -0.022 4.022 6 C -0.174 4.174 7 C -0.158 4.158 8 C 0.026 3.974 9 H 0.092 0.908 10 C 0.017 3.983 11 N -0.374 5.374 12 C -0.364 4.364 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.585 5.585 16 Si 0.739 3.261 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 H 0.108 0.892 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.216 0.784 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.263 -5.787 -2.433 17.433 hybrid contribution 0.795 0.137 0.452 0.925 sum -15.469 -5.650 -1.981 16.587 Atomic orbital electron populations 1.21888 0.92019 1.05057 1.03730 1.20436 0.90088 0.82386 0.76357 1.90771 1.70553 1.30598 1.49229 1.48611 1.07767 1.05685 1.73018 1.22304 0.96797 0.82417 1.00689 1.22808 0.95254 0.98547 1.00757 1.22663 0.96731 0.93130 1.03278 1.21820 0.79047 0.96259 1.00305 0.90770 1.20988 0.85614 0.98115 0.93600 1.42218 0.98926 1.75801 1.20406 1.19277 0.87806 1.32868 0.96423 0.91215 1.24718 0.96642 1.02191 0.97609 1.69667 1.11074 1.52211 1.25525 0.86101 0.80894 0.78041 0.81112 1.20597 1.21918 1.21871 0.89208 0.89761 0.89798 0.91385 0.90903 0.90047 0.90862 0.89935 0.89858 0.94732 0.96279 0.78386 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.25 36.00 0.33 -1.33 16 2 C 0.52 8.25 7.78 -10.99 -0.09 8.16 16 3 O -0.54 -11.34 15.87 5.55 0.09 -11.25 16 4 N -0.62 -9.25 3.07 -163.02 -0.50 -9.75 16 5 C 0.10 1.06 6.74 -2.53 -0.02 1.04 16 6 C -0.14 -1.42 7.08 -24.58 -0.17 -1.60 16 7 C -0.12 -1.79 6.23 -24.90 -0.16 -1.95 16 8 C 0.13 2.33 2.95 -66.96 -0.20 2.13 16 9 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 10 C 0.15 3.30 5.66 -4.04 -0.02 3.28 16 11 N -0.73 -19.66 5.41 -59.90 -0.32 -19.98 16 12 C -0.23 -6.88 9.99 -15.06 -0.15 -7.03 16 13 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -29.11 13.06 55.49 0.72 -28.38 16 16 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 20 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.08 0.64 7.95 -51.93 -0.41 0.23 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.56 7.47 -51.93 -0.39 0.17 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.33 7.77 -51.93 -0.40 0.92 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.03 0.89 6.55 -51.93 -0.34 0.55 16 30 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 31 H 0.38 10.60 7.61 -40.82 -0.31 10.29 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 267.94 15.07 4.04 4.04 Total: -1.00 -34.89 267.94 -6.34 -41.23 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.78 Total: 3.73 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.57 Total: 2.13 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.10 Total: -58.11 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.89 -6.34 -41.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568131929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.184 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds