Wall clock time and date at job start Mon Mar 30 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99961 * 2 1 4 4 N 1.34778 * 120.00226 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64813 * 355.10157 * 4 2 1 6 6 C 1.54904 * 104.83299 * 155.83415 * 5 4 2 7 7 C 1.55159 * 101.58056 * 37.01150 * 6 5 4 8 8 C 1.47023 * 125.64860 * 174.79489 * 4 2 1 9 9 H 1.08994 * 109.88219 * 300.51389 * 8 4 2 10 10 C 1.53000 * 109.88251 * 61.68020 * 8 4 2 11 11 N 1.46505 * 109.47144 * 185.23040 * 10 8 4 12 12 C 1.36931 * 119.99882 * 185.01473 * 11 10 8 13 13 H 1.07998 * 120.00484 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99814 * 180.02562 * 12 11 10 15 15 N 1.31609 * 119.99920 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99981 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46944 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47055 * 120.00029 * 16 14 12 19 19 H 1.48495 * 109.47452 * 240.00193 * 16 14 12 20 20 H 1.08995 * 109.47074 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47516 * 239.99834 * 1 2 3 22 22 H 1.09005 * 109.46883 * 120.00019 * 1 2 3 23 23 H 1.09001 * 110.36789 * 274.67771 * 5 4 2 24 24 H 1.09002 * 110.36528 * 36.99792 * 5 4 2 25 25 H 1.08997 * 111.00658 * 155.08787 * 6 5 4 26 26 H 1.09003 * 111.00776 * 278.94328 * 6 5 4 27 27 H 1.08997 * 110.72298 * 82.86231 * 7 6 5 28 28 H 1.09000 * 110.72123 * 206.13515 * 7 6 5 29 29 H 1.09000 * 109.47246 * 305.23397 * 10 8 4 30 30 H 1.09007 * 109.47080 * 65.23070 * 10 8 4 31 31 H 0.96998 * 119.99600 * 5.01921 * 11 10 8 32 32 H 0.97008 * 120.00274 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5769 -2.5081 0.1034 6 6 2.6112 -3.4600 -0.5474 7 6 3.9506 -2.8258 -0.0878 8 6 3.6397 -1.3143 -0.1078 9 1 3.9883 -0.8746 -1.0422 10 6 4.3213 -0.6300 1.0788 11 7 5.7746 -0.6730 0.8986 12 6 6.6011 -0.2111 1.8878 13 1 6.1818 0.1847 2.8010 14 6 7.9781 -0.2514 1.7168 15 7 8.4891 -0.7331 0.6037 16 14 9.1056 0.3795 3.0659 17 1 8.2886 0.8661 4.2066 18 1 9.9912 -0.7204 3.5255 19 1 9.9334 1.4939 2.5384 20 1 -0.3633 1.0276 -0.0005 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3633 -0.5139 -0.8900 23 1 1.4210 -2.7748 1.1488 24 1 0.6339 -2.5423 -0.4423 25 1 2.5062 -4.4739 -0.1613 26 1 2.5252 -3.4465 -1.6339 27 1 4.2089 -3.1568 0.9181 28 1 4.7501 -3.0620 -0.7899 29 1 3.9930 0.4077 1.1374 30 1 4.0539 -1.1482 1.9998 31 1 6.1512 -1.0288 0.0785 32 1 9.4514 -0.7617 0.4844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568131929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:46 Heat of formation + Delta-G solvation = -51.811817 kcal Electronic energy + Delta-G solvation = -14350.856040 eV Core-core repulsion = 11924.463291 eV Total energy + Delta-G solvation = -2426.392749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14841 -38.58425 -36.44903 -33.64178 -32.73995 -30.82951 -29.58643 -26.75305 -24.78051 -23.44535 -21.88979 -20.21313 -19.07825 -17.96786 -17.46494 -16.49834 -16.20428 -15.68066 -15.16076 -15.07682 -14.98589 -14.18880 -13.76761 -13.55981 -13.31067 -13.16755 -12.92717 -12.90972 -12.73323 -12.17810 -12.02704 -11.93612 -11.80532 -11.59283 -11.07011 -10.81269 -9.66913 -9.07468 -8.00882 -5.31087 1.43028 1.45423 1.55594 1.64993 2.03202 2.53145 3.31614 3.54917 3.67125 3.91541 3.99710 4.10931 4.29864 4.35292 4.50579 4.53916 4.65521 4.73425 4.85202 4.96355 5.03910 5.06896 5.14457 5.15477 5.35906 5.40375 5.48466 6.20829 6.62770 7.20276 7.27075 7.98196 8.26146 9.22818 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042394 B = 0.007556 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.312254 B = 3704.816014 C = 4137.739356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.504 3.496 3 O -0.604 6.604 4 N -0.615 5.615 5 C 0.096 3.904 6 C -0.120 4.120 7 C -0.118 4.118 8 C 0.133 3.867 9 H 0.048 0.952 10 C 0.152 3.848 11 N -0.737 5.737 12 C -0.253 4.253 13 H 0.068 0.932 14 C -0.071 4.071 15 N -0.967 5.967 16 Si 0.978 3.022 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.291 1.291 20 H 0.087 0.913 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.001 0.999 30 H 0.020 0.980 31 H 0.376 0.624 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 -8.079 -2.222 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.296 3.704 3 O -0.486 6.486 4 N -0.349 5.349 5 C -0.025 4.025 6 C -0.158 4.158 7 C -0.156 4.156 8 C 0.028 3.972 9 H 0.066 0.934 10 C 0.025 3.975 11 N -0.381 5.381 12 C -0.384 4.384 13 H 0.086 0.914 14 C -0.263 4.263 15 N -0.617 5.617 16 Si 0.806 3.194 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.218 1.218 20 H 0.106 0.894 21 H 0.131 0.869 22 H 0.136 0.864 23 H 0.099 0.901 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.208 0.792 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.254 -7.391 -2.048 19.799 hybrid contribution 1.376 0.629 0.327 1.548 sum -16.877 -6.762 -1.720 18.263 Atomic orbital electron populations 1.21895 0.86628 1.06045 1.06590 1.21706 0.92574 0.81455 0.74653 1.90740 1.72370 1.33106 1.52351 1.48791 1.06294 1.07726 1.72091 1.22685 0.98111 0.79338 1.02330 1.22830 0.91648 0.99697 1.01630 1.22568 0.99465 0.91042 1.02554 1.21548 0.81263 0.97793 0.96577 0.93414 1.20965 0.83861 0.96717 0.96003 1.42345 1.00536 1.75526 1.19648 1.19612 0.88749 1.33119 0.96947 0.91445 1.25601 0.98021 1.02580 1.00144 1.69817 1.11350 1.53162 1.27385 0.85012 0.78573 0.77380 0.78390 1.19474 1.21040 1.21764 0.89367 0.86910 0.86435 0.90067 0.86602 0.87015 0.89665 0.91251 0.90784 0.98139 0.96190 0.79223 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.25 71.24 0.66 -1.88 16 2 C 0.50 15.74 7.78 87.66 0.68 16.42 16 3 O -0.60 -26.75 15.87 -3.05 -0.05 -26.80 16 4 N -0.61 -17.77 3.07 -788.06 -2.42 -20.18 16 5 C 0.10 1.63 6.74 86.85 0.59 2.21 16 6 C -0.12 -2.10 7.08 31.99 0.23 -1.88 16 7 C -0.12 -3.47 6.23 31.78 0.20 -3.27 16 8 C 0.13 4.92 2.95 45.34 0.13 5.05 16 9 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 10 C 0.15 7.27 5.66 86.38 0.49 7.75 16 11 N -0.74 -41.49 5.41 -343.44 -1.86 -43.35 16 12 C -0.25 -15.37 9.99 84.03 0.84 -14.54 16 13 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 14 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 15 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16 16 Si 0.98 48.28 29.55 68.60 2.03 50.31 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 20 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 21 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.12 1.20 7.95 -2.38 -0.02 1.19 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.12 1.06 7.47 -2.39 -0.02 1.04 16 25 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.00 0.04 6.55 -2.39 -0.02 0.02 16 30 H 0.02 0.95 8.01 -2.38 -0.02 0.93 16 31 H 0.38 21.83 7.61 -92.71 -0.71 21.12 16 32 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -80.04 267.94 2.66 -77.38 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.40 Total: 17.57 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.28 Total: 6.05 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -3.99 Total: -124.51 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -80.04 2.66 -77.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568131929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.570 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds