Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00256 * 2 1 4 4 H 1.07997 * 120.00141 * 202.33797 * 3 2 1 5 5 C 1.38811 * 120.00153 * 22.34821 * 3 2 1 6 6 N 1.31624 * 119.99814 * 11.35125 * 5 3 2 7 7 Si 1.86794 * 120.00198 * 191.35121 * 5 3 2 8 8 H 1.48499 * 109.47300 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47190 * 120.00115 * 7 5 3 10 10 H 1.48498 * 109.47296 * 239.99822 * 7 5 3 11 11 C 1.46503 * 119.99682 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46922 * 270.00048 * 11 2 1 13 13 N 1.46506 * 109.47292 * 180.02562 * 12 11 2 14 14 C 1.34773 * 120.00201 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99966 * 180.02562 * 14 13 12 17 17 C 1.53004 * 117.49648 * 248.62098 * 16 14 13 18 18 C 1.52997 * 60.00202 * 252.50962 * 17 16 14 19 19 H 1.08996 * 109.47241 * 274.21189 * 1 2 3 20 20 H 1.09009 * 109.46470 * 34.20378 * 1 2 3 21 21 H 1.09000 * 109.47265 * 154.20056 * 1 2 3 22 22 H 0.96997 * 119.99665 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47475 * 150.00107 * 11 2 1 24 24 H 1.09000 * 109.46834 * 29.99748 * 11 2 1 25 25 H 1.09000 * 109.47121 * 299.99524 * 12 11 2 26 26 H 1.09000 * 109.47497 * 59.99747 * 12 11 2 27 27 H 0.96999 * 119.99448 * 359.97438 * 13 12 11 28 28 H 1.08999 * 115.54952 * 34.33196 * 16 14 13 29 29 H 1.09000 * 117.50085 * 0.02562 * 17 16 14 30 30 H 1.09007 * 117.49310 * 145.01884 * 17 16 14 31 31 H 1.09004 * 117.50266 * 252.51293 * 18 17 16 32 32 H 1.08999 * 117.51372 * 107.47793 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5340 2.3429 0.4571 6 7 0.3843 2.2690 1.0938 7 14 2.3368 4.0046 0.1686 8 1 3.6145 3.8166 -0.5644 9 1 1.4268 4.8615 -0.6333 10 1 2.6076 4.6570 1.4749 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9796 1.4413 14 6 3.5228 -3.5634 2.6082 15 8 3.2193 -3.0388 3.6587 16 6 4.2773 -4.8679 2.6076 17 6 3.5370 -6.1123 3.1019 18 6 4.6310 -5.4800 3.9646 19 1 -0.3633 0.0755 1.0248 20 1 -0.3632 0.8500 -0.5778 21 1 -0.3634 -0.9252 -0.4473 22 1 -0.0461 3.0776 1.4128 23 1 3.1499 -1.1383 -0.5143 24 1 1.6083 -2.0282 -0.5147 25 1 3.0416 -0.9517 1.9559 26 1 1.5000 -1.8416 1.9556 27 1 3.4279 -3.3992 0.6010 28 1 4.9927 -4.9968 1.7955 29 1 2.5041 -5.9875 3.4271 30 1 3.7652 -7.0603 2.6147 31 1 5.5790 -6.0120 4.0450 32 1 4.3183 -4.9389 4.8576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714531069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = 7.237196 kcal Electronic energy + Delta-G solvation = -13870.389218 eV Core-core repulsion = 11446.557027 eV Total energy + Delta-G solvation = -2423.832192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62030 -36.49578 -35.69309 -34.05591 -31.30114 -28.32660 -25.88760 -24.61544 -22.57821 -22.39486 -20.63496 -19.69360 -17.32244 -16.71465 -15.64607 -15.19893 -14.71676 -14.56314 -14.05428 -13.59059 -13.12495 -12.55779 -12.37175 -12.23559 -11.64127 -11.20559 -10.89182 -10.85249 -10.69340 -10.61394 -10.51118 -10.26531 -9.97204 -9.89842 -9.55112 -8.61648 -8.54536 -6.81945 -5.74237 -3.21479 2.73771 3.37285 3.43725 3.46513 3.48779 3.86532 4.49822 4.70150 4.82509 4.82934 5.17117 5.41177 5.47489 5.64084 5.66509 5.85227 5.89480 6.00923 6.05884 6.28699 6.70421 6.73753 6.76404 7.00484 7.36945 7.72256 7.80585 7.87045 8.37223 8.57092 9.21309 9.83332 10.31476 11.30987 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052513 B = 0.005954 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.068388 B = 4701.264912 C = 4877.032772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.721 5.721 14 C 0.533 3.467 15 O -0.545 6.545 16 C -0.193 4.193 17 C -0.155 4.155 18 C -0.151 4.151 19 H 0.029 0.971 20 H 0.047 0.953 21 H -0.002 1.002 22 H 0.253 0.747 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.396 0.604 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -14.431 -0.578 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.371 5.371 14 C 0.319 3.681 15 O -0.422 6.422 16 C -0.214 4.214 17 C -0.193 4.193 18 C -0.188 4.188 19 H 0.048 0.952 20 H 0.066 0.934 21 H 0.016 0.984 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.654 -13.849 0.209 14.960 hybrid contribution 0.504 0.806 -0.430 1.043 sum 6.158 -13.043 -0.221 14.425 Atomic orbital electron populations 1.20850 0.82153 0.95744 0.99481 1.43939 1.02081 1.00367 1.85568 1.19271 0.98143 0.85218 1.36270 0.91158 1.25072 0.97651 0.98713 0.98118 1.70083 1.17812 1.27131 1.40071 0.86146 0.78640 0.84055 0.77469 1.20274 1.21548 1.21633 1.20993 0.96350 0.88909 0.92177 1.22524 0.95701 0.82840 1.02098 1.46120 1.58052 1.25156 1.07801 1.19655 0.79249 0.85120 0.84119 1.90699 1.55080 1.64922 1.31537 1.22252 1.04504 0.93454 1.01178 1.22911 0.98318 0.94903 1.03123 1.22924 0.99642 1.02156 0.94088 0.95234 0.93414 0.98376 0.93672 0.93318 0.93974 0.91369 0.92271 0.77129 0.86077 0.88314 0.88010 0.88162 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.11 2.93 -181.12 -0.53 -15.64 16 3 C -0.26 -7.18 9.67 -15.06 -0.15 -7.32 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.82 10.59 55.49 0.59 -26.23 16 7 Si 0.91 22.06 29.57 -169.99 -5.03 17.04 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.14 2.89 5.82 -4.04 -0.02 2.87 16 12 C 0.09 1.89 6.00 -4.04 -0.02 1.86 16 13 N -0.72 -11.29 5.56 -60.29 -0.33 -11.62 16 14 C 0.53 8.79 7.61 -10.99 -0.08 8.71 16 15 O -0.54 -11.54 16.26 5.56 0.09 -11.45 16 16 C -0.19 -2.23 6.19 -91.77 -0.57 -2.80 16 17 C -0.16 -1.52 10.23 -26.73 -0.27 -1.79 16 18 C -0.15 -1.60 10.04 -26.73 -0.27 -1.87 16 19 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 20 H 0.05 1.27 7.19 -51.92 -0.37 0.89 16 21 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 24 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 25 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.40 4.73 8.47 -40.82 -0.35 4.39 16 28 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 1.35 7.67 -51.93 -0.40 0.95 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -32.71 275.42 -6.82 -39.52 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.82 Total: 0.00 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.94 Total: 4.23 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.28 Total: -53.49 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.71 -6.82 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714531069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.761 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds