Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00256 * 2 1 4 4 H 1.07997 * 120.00141 * 202.33797 * 3 2 1 5 5 C 1.38811 * 120.00153 * 22.34821 * 3 2 1 6 6 N 1.31624 * 119.99814 * 11.35125 * 5 3 2 7 7 Si 1.86794 * 120.00198 * 191.35121 * 5 3 2 8 8 H 1.48499 * 109.47300 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47190 * 120.00115 * 7 5 3 10 10 H 1.48498 * 109.47296 * 239.99822 * 7 5 3 11 11 C 1.46503 * 119.99682 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46922 * 270.00048 * 11 2 1 13 13 N 1.46506 * 109.47292 * 180.02562 * 12 11 2 14 14 C 1.34773 * 120.00201 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99966 * 180.02562 * 14 13 12 17 17 C 1.53004 * 117.49648 * 248.62098 * 16 14 13 18 18 C 1.52997 * 60.00202 * 252.50962 * 17 16 14 19 19 H 1.08996 * 109.47241 * 274.21189 * 1 2 3 20 20 H 1.09009 * 109.46470 * 34.20378 * 1 2 3 21 21 H 1.09000 * 109.47265 * 154.20056 * 1 2 3 22 22 H 0.96997 * 119.99665 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47475 * 150.00107 * 11 2 1 24 24 H 1.09000 * 109.46834 * 29.99748 * 11 2 1 25 25 H 1.09000 * 109.47121 * 299.99524 * 12 11 2 26 26 H 1.09000 * 109.47497 * 59.99747 * 12 11 2 27 27 H 0.96999 * 119.99448 * 359.97438 * 13 12 11 28 28 H 1.08999 * 115.54952 * 34.33196 * 16 14 13 29 29 H 1.09000 * 117.50085 * 0.02562 * 17 16 14 30 30 H 1.09007 * 117.49310 * 145.01884 * 17 16 14 31 31 H 1.09004 * 117.50266 * 252.51293 * 18 17 16 32 32 H 1.08999 * 117.51372 * 107.47793 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5340 2.3429 0.4571 6 7 0.3843 2.2690 1.0938 7 14 2.3368 4.0046 0.1686 8 1 3.6145 3.8166 -0.5644 9 1 1.4268 4.8615 -0.6333 10 1 2.6076 4.6570 1.4749 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 7 3.1854 -2.9796 1.4413 14 6 3.5228 -3.5634 2.6082 15 8 3.2193 -3.0388 3.6587 16 6 4.2773 -4.8679 2.6076 17 6 3.5370 -6.1123 3.1019 18 6 4.6310 -5.4800 3.9646 19 1 -0.3633 0.0755 1.0248 20 1 -0.3632 0.8500 -0.5778 21 1 -0.3634 -0.9252 -0.4473 22 1 -0.0461 3.0776 1.4128 23 1 3.1499 -1.1383 -0.5143 24 1 1.6083 -2.0282 -0.5147 25 1 3.0416 -0.9517 1.9559 26 1 1.5000 -1.8416 1.9556 27 1 3.4279 -3.3992 0.6010 28 1 4.9927 -4.9968 1.7955 29 1 2.5041 -5.9875 3.4271 30 1 3.7652 -7.0603 2.6147 31 1 5.5790 -6.0120 4.0450 32 1 4.3183 -4.9389 4.8576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714531069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -15.870475 kcal Electronic energy + Delta-G solvation = -13871.391242 eV Core-core repulsion = 11446.557027 eV Total energy + Delta-G solvation = -2424.834216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92252 -38.02525 -37.01180 -35.69447 -33.28644 -30.03994 -27.95957 -26.07614 -24.04338 -23.27883 -22.39723 -21.01028 -18.84475 -18.39855 -17.06045 -16.77418 -16.46561 -15.84276 -15.41928 -15.39013 -14.79169 -14.26639 -14.16217 -13.52665 -13.13116 -12.83059 -12.66903 -12.50815 -12.41658 -12.06997 -12.03648 -11.77651 -11.52002 -11.42061 -10.94384 -10.69325 -10.09372 -8.88726 -7.86981 -5.36798 1.45356 1.46354 1.50524 1.57040 2.16288 2.51145 2.95121 3.28910 3.66282 3.83172 3.94476 4.01792 4.20615 4.25839 4.34346 4.63410 4.75947 4.82692 4.92855 5.03694 5.06241 5.14497 5.25319 5.30279 5.47030 5.61272 5.70137 6.29201 6.61491 7.10759 7.30265 7.81401 8.23816 9.17197 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052513 B = 0.005954 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.068388 B = 4701.264912 C = 4877.032772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.262 1.262 9 H -0.288 1.288 10 H -0.296 1.296 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.706 5.706 14 C 0.525 3.475 15 O -0.602 6.602 16 C -0.197 4.197 17 C -0.138 4.138 18 C -0.155 4.155 19 H -0.003 1.003 20 H 0.022 0.978 21 H 0.037 0.963 22 H 0.248 0.752 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.030 0.970 27 H 0.418 0.582 28 H 0.159 0.841 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 -16.470 -2.136 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.396 4.396 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.800 3.200 8 H -0.186 1.186 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.020 3.980 12 C -0.013 4.013 13 N -0.357 5.357 14 C 0.313 3.687 15 O -0.483 6.483 16 C -0.217 4.217 17 C -0.175 4.175 18 C -0.193 4.193 19 H 0.016 0.984 20 H 0.041 0.959 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.256 0.744 28 H 0.176 0.824 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.390 -15.945 -1.400 17.630 hybrid contribution -0.011 1.341 0.071 1.343 sum 7.379 -14.604 -1.329 16.416 Atomic orbital electron populations 1.20605 0.82437 0.96542 0.97441 1.44200 1.02399 1.01651 1.85608 1.19653 0.98387 0.86386 1.35205 0.90515 1.25884 0.98419 1.02248 0.98502 1.70262 1.19371 1.27540 1.41624 0.85134 0.78276 0.79701 0.76930 1.18610 1.21454 1.22341 1.21141 0.97223 0.87589 0.92022 1.21931 0.94070 0.83936 1.01356 1.45845 1.57222 1.23565 1.09114 1.20630 0.78539 0.86446 0.83085 1.90679 1.57322 1.66787 1.33555 1.22280 1.05302 0.91035 1.03119 1.23049 0.97182 0.95350 1.01929 1.23023 1.01571 1.02133 0.92525 0.98446 0.95884 0.94494 0.94262 0.91560 0.90587 0.95445 0.95124 0.74421 0.82353 0.90020 0.84194 0.84906 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.76 9.01 127.77 1.15 9.91 16 2 N -0.62 -30.97 2.93 -726.92 -2.13 -33.09 16 3 C -0.27 -14.71 9.67 84.03 0.81 -13.89 16 4 H 0.08 4.06 7.84 -2.91 -0.02 4.03 16 5 C -0.06 -3.18 5.13 84.86 0.44 -2.74 16 6 N -0.94 -57.31 10.59 21.65 0.23 -57.08 16 7 Si 0.97 45.77 29.57 68.60 2.03 47.80 16 8 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 11 C 0.15 5.64 5.82 86.38 0.50 6.15 16 12 C 0.11 4.60 6.00 86.38 0.52 5.12 16 13 N -0.71 -21.07 5.56 -463.06 -2.57 -23.64 16 14 C 0.52 16.91 7.61 87.66 0.67 17.58 16 15 O -0.60 -26.31 16.26 -3.03 -0.05 -26.36 16 16 C -0.20 -3.97 6.19 -11.54 -0.07 -4.04 16 17 C -0.14 -2.26 10.23 30.59 0.31 -1.95 16 18 C -0.16 -2.94 10.04 30.59 0.31 -2.63 16 19 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 20 H 0.02 1.23 7.19 -2.38 -0.02 1.21 16 21 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 22 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 23 H 0.07 2.33 8.03 -2.39 -0.02 2.31 16 24 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.42 8.65 8.47 -92.71 -0.79 7.86 16 28 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 Total: -1.00 -74.11 275.42 2.46 -71.65 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.32 Total: 7.22 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 4.64 Total: 13.50 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -4.47 Total: -113.82 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.11 2.46 -71.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714531069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.780 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds