Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99361 * 45.78870 * 12 11 10 14 14 C 1.53045 * 109.52212 * 185.84617 * 13 12 11 15 15 C 1.53126 * 109.27267 * 300.82193 * 14 13 12 16 16 N 1.46902 * 109.57091 * 177.59130 * 15 14 13 17 17 C 1.53111 * 109.16377 * 57.65554 * 15 14 13 18 18 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 19 19 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 25 25 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 26 26 H 1.09000 * 109.46861 * 305.85669 * 13 12 11 27 27 H 1.08996 * 109.46450 * 65.82852 * 13 12 11 28 28 H 1.08996 * 109.50378 * 180.88718 * 14 13 12 29 29 H 1.08993 * 109.50521 * 60.75626 * 14 13 12 30 30 H 1.09003 * 109.52363 * 297.74473 * 15 14 13 31 31 H 1.00904 * 110.99797 * 60.28494 * 16 15 14 32 32 H 1.00905 * 110.99535 * 184.23639 * 16 15 14 33 33 H 1.08993 * 109.50713 * 182.40312 * 17 15 14 34 34 H 1.08998 * 109.50742 * 62.28519 * 17 15 14 35 35 H 1.09001 * 109.45873 * 294.17853 * 18 12 11 36 36 H 1.08996 * 109.45873 * 54.15658 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0410 -4.0218 0.0004 13 6 5.3151 -4.8369 -0.9820 14 6 5.7475 -6.2993 -0.8528 15 6 7.2566 -6.4030 -1.0910 16 7 7.6885 -7.7956 -0.9117 17 6 7.9867 -5.5075 -0.0863 18 6 7.4893 -4.0681 -0.2377 19 1 -0.4850 0.8401 -0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6810 0.8905 22 1 3.6577 -3.1507 0.8897 23 1 3.6584 -3.1504 -0.8902 24 1 5.9147 -2.1229 -0.8901 25 1 5.9147 -2.1231 0.8899 26 1 4.2435 -4.7577 -0.7989 27 1 5.5390 -4.4794 -1.9870 28 1 5.2202 -6.9014 -1.5926 29 1 5.5114 -6.6616 0.1477 30 1 7.4886 -6.0773 -2.1050 31 1 7.2200 -8.4063 -1.5642 32 1 8.6908 -7.8769 -0.9959 33 1 9.0590 -5.5440 -0.2784 34 1 7.7858 -5.8573 0.9263 35 1 7.7030 -3.7141 -1.2462 36 1 7.9968 -3.4305 0.4862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036754094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -37.821415 kcal Electronic energy + Delta-G solvation = -14278.512233 eV Core-core repulsion = 11988.559248 eV Total energy + Delta-G solvation = -2289.952985 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23438 -36.93935 -35.30209 -33.56377 -31.83661 -30.94924 -28.12613 -25.01408 -24.18088 -22.94125 -21.38773 -20.56259 -18.89679 -17.05583 -16.51175 -16.34382 -16.19000 -15.97549 -15.73638 -14.96441 -14.76673 -14.21564 -14.06118 -13.65553 -13.46683 -13.00154 -12.72272 -12.45366 -12.20513 -12.13604 -11.87100 -11.78134 -11.47561 -11.46237 -11.32338 -10.99356 -10.76210 -9.60827 -9.23023 -8.29592 -6.34022 1.35627 1.38139 1.50481 2.36528 2.95526 3.05730 3.52053 3.80535 3.88967 4.11325 4.20477 4.27953 4.34648 4.45679 4.59854 4.62092 4.64107 4.84134 4.86729 4.89917 4.95636 4.99928 5.04600 5.19903 5.22919 5.39315 5.49693 5.58895 5.65723 6.12115 6.23359 6.26391 6.30095 6.63409 6.74080 7.30656 8.87517 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066561 B = 0.005553 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.565695 B = 5041.531285 C = 5361.388652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.095 4.095 11 C 0.064 3.936 12 N -0.547 5.547 13 C 0.049 3.951 14 C -0.103 4.103 15 C 0.093 3.907 16 N -0.851 5.851 17 C -0.103 4.103 18 C 0.054 3.946 19 H 0.266 0.734 20 H 0.018 0.982 21 H 0.021 0.979 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.348 0.652 32 H 0.350 0.650 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.068 -10.448 -3.265 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.133 4.133 11 C -0.064 4.064 12 N -0.272 5.272 13 C -0.080 4.080 14 C -0.142 4.142 15 C -0.018 4.018 16 N -0.382 5.382 17 C -0.141 4.141 18 C -0.074 4.074 19 H 0.075 0.925 20 H 0.036 0.964 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.546 -10.488 -2.071 21.407 hybrid contribution -0.044 1.154 -1.757 2.103 sum 18.502 -9.334 -3.828 21.074 Atomic orbital electron populations 1.70079 1.08392 1.28201 1.52722 1.26066 0.95649 1.03688 0.94031 0.85601 0.79524 0.77942 0.79235 1.19091 1.20909 1.16853 1.21506 0.92227 0.93057 1.50414 0.95290 1.19494 0.93829 0.94921 0.96521 1.21446 0.93969 0.97143 1.00757 1.22090 0.94789 0.88745 1.00728 1.62004 1.04547 1.10517 1.50152 1.22182 0.99054 0.93760 0.92969 1.21549 0.95488 0.94613 1.02527 1.21304 0.94707 0.89140 0.96692 1.58660 1.12188 1.06514 1.60866 1.21551 0.99559 0.92942 1.00043 1.22143 0.87429 0.97937 0.99870 0.92482 0.96358 0.96042 0.93316 0.93062 0.94818 0.90463 0.91104 0.95241 0.90925 0.91716 0.94874 0.83892 0.83682 0.89913 0.91510 0.94894 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 44.84 27.47 68.60 1.88 46.72 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 7 C -0.53 -31.72 9.66 25.60 0.25 -31.47 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.34 16 10 C -0.10 -3.86 4.40 30.59 0.13 -3.73 16 11 C 0.06 2.07 5.27 86.30 0.46 2.52 16 12 N -0.55 -15.73 4.81 -896.36 -4.31 -20.04 16 13 C 0.05 1.36 4.85 86.33 0.42 1.78 16 14 C -0.10 -2.39 5.68 30.65 0.17 -2.22 16 15 C 0.09 1.77 3.31 44.99 0.15 1.92 16 16 N -0.85 -13.42 9.25 -168.34 -1.56 -14.98 16 17 C -0.10 -1.99 5.64 30.64 0.17 -1.82 16 18 C 0.05 1.23 5.43 86.33 0.47 1.70 16 19 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 20 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 21 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 22 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.05 2.10 6.21 -2.39 -0.01 2.08 16 24 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.07 2.25 5.81 -2.39 -0.01 2.24 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.35 4.58 9.04 -89.69 -0.81 3.77 16 32 H 0.35 4.20 9.00 -89.69 -0.81 3.40 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 Total: -1.00 -66.76 280.59 -1.50 -68.26 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -0.62 Total: 11.81 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 2.80 Total: -31.07 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -5.57 Total: -95.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.76 -1.50 -68.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036754094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.442 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds