Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47132 * 180.02562 * 11 10 9 13 13 C 1.46848 * 111.00506 * 45.78823 * 12 11 10 14 14 C 1.53041 * 109.52499 * 185.84035 * 13 12 11 15 15 C 1.53117 * 109.27666 * 300.82047 * 14 13 12 16 16 C 1.53120 * 109.16040 * 57.65645 * 15 14 13 17 17 H 1.09004 * 109.50740 * 62.28681 * 16 15 14 18 18 N 1.46902 * 109.50233 * 182.40217 * 16 15 14 19 19 C 1.46850 * 110.99879 * 170.00174 * 12 11 10 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 22 22 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 23 23 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 24 24 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 25 25 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 26 26 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 27 27 H 1.08997 * 109.46153 * 305.85778 * 13 12 11 28 28 H 1.08999 * 109.45854 * 65.82612 * 13 12 11 29 29 H 1.08994 * 109.49886 * 180.87933 * 14 13 12 30 30 H 1.08997 * 109.53300 * 60.77923 * 14 13 12 31 31 H 1.08997 * 109.52799 * 297.75354 * 15 14 13 32 32 H 1.09001 * 109.57403 * 177.58969 * 15 14 13 33 33 H 1.00902 * 111.00233 * 299.79769 * 18 16 15 34 34 H 1.00900 * 111.00103 * 63.76173 * 18 16 15 35 35 H 1.08996 * 109.46067 * 294.16810 * 19 12 11 36 36 H 1.09000 * 109.46157 * 54.15260 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 7 6.0410 -4.0217 -0.0182 13 6 5.3151 -4.8318 -1.0047 14 6 5.7477 -6.2948 -0.8830 15 6 7.2566 -6.3973 -1.1218 16 6 7.9867 -5.5069 -0.1125 17 1 7.7858 -5.8620 0.8983 18 7 9.4319 -5.5548 -0.3716 19 6 7.4893 -4.0668 -0.2565 20 1 -0.4850 0.8401 0.0040 21 1 3.8752 -0.6760 -0.8923 22 1 3.8746 -0.6849 0.8876 23 1 3.6577 -3.1546 0.8760 24 1 3.6584 -3.1464 -0.9039 25 1 5.9147 -2.1190 -0.8992 26 1 5.9148 -2.1269 0.8808 27 1 4.2435 -4.7535 -0.8211 28 1 5.5391 -4.4691 -2.0079 29 1 5.2202 -6.8931 -1.6258 30 1 5.5114 -6.6629 0.1154 31 1 7.4886 -6.0663 -2.1340 32 1 7.5771 -7.4313 -0.9941 33 1 9.7843 -6.4961 -0.2824 34 1 9.6494 -5.1717 -1.2793 35 1 7.7031 -3.7078 -1.2632 36 1 7.9969 -3.4330 0.4707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041029840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -15.779984 kcal Electronic energy + Delta-G solvation = -14313.241006 eV Core-core repulsion = 12024.243809 eV Total energy + Delta-G solvation = -2288.997197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25036 -35.63962 -33.46411 -32.34080 -31.17511 -28.33456 -26.88914 -24.17300 -22.67325 -21.52024 -19.99982 -19.56090 -16.73038 -16.19421 -15.88107 -14.95948 -14.61050 -14.20593 -14.03943 -13.72674 -13.38969 -13.30485 -12.57777 -12.43042 -11.86794 -11.58420 -11.40575 -11.17629 -10.96078 -10.75113 -10.59556 -10.45123 -9.84988 -9.67547 -9.56777 -9.13777 -8.86482 -8.51547 -8.08838 -6.02270 -3.99949 3.32480 3.39559 3.43507 3.93206 4.47283 4.51478 4.71298 4.79004 5.00536 5.18897 5.31810 5.35035 5.49936 5.58042 5.61971 5.66272 5.78604 5.85406 5.98827 6.02988 6.11254 6.18156 6.28260 6.56437 6.60157 6.90777 6.91919 7.18738 7.30639 7.32882 7.37349 7.47788 7.82370 8.56718 9.02925 9.60538 11.11309 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060179 B = 0.005725 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.164696 B = 4890.038048 C = 5251.816162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.105 4.105 11 C 0.055 3.945 12 N -0.537 5.537 13 C 0.046 3.954 14 C -0.113 4.113 15 C -0.153 4.153 16 C 0.093 3.907 17 H 0.089 0.911 18 N -0.845 5.845 19 C 0.064 3.936 20 H 0.262 0.738 21 H 0.013 0.987 22 H 0.012 0.988 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.337 0.663 35 H 0.026 0.974 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.039 -11.095 -2.593 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.072 4.072 12 N -0.262 5.262 13 C -0.082 4.082 14 C -0.152 4.152 15 C -0.193 4.193 16 C -0.019 4.019 17 H 0.107 0.893 18 N -0.373 5.373 19 C -0.065 4.065 20 H 0.072 0.928 21 H 0.031 0.969 22 H 0.030 0.970 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.045 0.955 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.876 -10.683 -1.493 19.194 hybrid contribution 0.230 0.649 -1.665 1.801 sum 16.106 -10.034 -3.158 19.237 Atomic orbital electron populations 1.69922 1.06305 1.26832 1.51354 1.25038 0.94727 0.99174 0.94611 0.86768 0.80309 0.83612 0.78524 1.20255 1.19093 1.21438 1.21144 0.89502 0.94440 1.50575 0.91063 1.19551 0.97159 0.92252 0.96163 1.21629 0.91133 0.99890 1.01594 1.22302 0.97658 0.87004 1.00253 1.61927 1.02662 1.12215 1.49376 1.22252 1.00191 0.92611 0.93147 1.21532 0.94746 0.96507 1.02409 1.22448 0.97260 0.99938 0.99666 1.21477 0.85953 0.95088 0.99359 0.89281 1.58849 1.13836 1.27286 1.37377 1.21997 0.88892 0.95999 0.99601 0.92783 0.96868 0.96970 0.91875 0.92567 0.95434 0.90959 0.89051 0.95336 0.91714 0.90968 0.92584 0.92223 0.84647 0.85080 0.95534 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 10 C -0.10 -2.11 4.40 -26.73 -0.12 -2.23 16 11 C 0.05 0.93 5.27 -3.82 -0.02 0.91 16 12 N -0.54 -8.01 4.81 -234.67 -1.13 -9.14 16 13 C 0.05 0.64 4.85 -3.83 -0.02 0.62 16 14 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 15 C -0.15 -1.52 5.57 -26.61 -0.15 -1.67 16 16 C 0.09 1.00 3.41 -67.63 -0.23 0.77 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 N -0.85 -7.67 9.26 -4.59 -0.04 -7.71 16 19 C 0.06 0.82 4.97 -3.83 -0.02 0.80 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.01 0.32 7.19 -51.93 -0.37 -0.05 16 22 H 0.01 0.29 7.58 -51.93 -0.39 -0.10 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 24 H 0.06 1.12 6.21 -51.93 -0.32 0.80 16 25 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.39 5.81 -51.93 -0.30 1.09 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.34 2.48 9.04 -39.29 -0.36 2.13 16 34 H 0.34 2.75 8.98 -39.29 -0.35 2.39 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 LS Contribution 280.57 15.07 4.23 4.23 Total: -1.00 -30.55 280.57 -8.43 -38.98 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.33 Total: -0.05 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.26 Total: -16.19 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.40 Total: -44.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.55 -8.43 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041029840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds