Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47132 * 180.02562 * 11 10 9 13 13 C 1.46848 * 111.00506 * 45.78823 * 12 11 10 14 14 C 1.53041 * 109.52499 * 185.84035 * 13 12 11 15 15 C 1.53117 * 109.27666 * 300.82047 * 14 13 12 16 16 C 1.53120 * 109.16040 * 57.65645 * 15 14 13 17 17 H 1.09004 * 109.50740 * 62.28681 * 16 15 14 18 18 N 1.46902 * 109.50233 * 182.40217 * 16 15 14 19 19 C 1.46850 * 110.99879 * 170.00174 * 12 11 10 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 22 22 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 23 23 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 24 24 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 25 25 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 26 26 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 27 27 H 1.08997 * 109.46153 * 305.85778 * 13 12 11 28 28 H 1.08999 * 109.45854 * 65.82612 * 13 12 11 29 29 H 1.08994 * 109.49886 * 180.87933 * 14 13 12 30 30 H 1.08997 * 109.53300 * 60.77923 * 14 13 12 31 31 H 1.08997 * 109.52799 * 297.75354 * 15 14 13 32 32 H 1.09001 * 109.57403 * 177.58969 * 15 14 13 33 33 H 1.00902 * 111.00233 * 299.79769 * 18 16 15 34 34 H 1.00900 * 111.00103 * 63.76173 * 18 16 15 35 35 H 1.08996 * 109.46067 * 294.16810 * 19 12 11 36 36 H 1.09000 * 109.46157 * 54.15260 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 7 6.0410 -4.0217 -0.0182 13 6 5.3151 -4.8318 -1.0047 14 6 5.7477 -6.2948 -0.8830 15 6 7.2566 -6.3973 -1.1218 16 6 7.9867 -5.5069 -0.1125 17 1 7.7858 -5.8620 0.8983 18 7 9.4319 -5.5548 -0.3716 19 6 7.4893 -4.0668 -0.2565 20 1 -0.4850 0.8401 0.0040 21 1 3.8752 -0.6760 -0.8923 22 1 3.8746 -0.6849 0.8876 23 1 3.6577 -3.1546 0.8760 24 1 3.6584 -3.1464 -0.9039 25 1 5.9147 -2.1190 -0.8992 26 1 5.9148 -2.1269 0.8808 27 1 4.2435 -4.7535 -0.8211 28 1 5.5391 -4.4691 -2.0079 29 1 5.2202 -6.8931 -1.6258 30 1 5.5114 -6.6629 0.1154 31 1 7.4886 -6.0663 -2.1340 32 1 7.5771 -7.4313 -0.9941 33 1 9.7843 -6.4961 -0.2824 34 1 9.6494 -5.1717 -1.2793 35 1 7.7031 -3.7078 -1.2632 36 1 7.9969 -3.4330 0.4707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041029840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -38.472405 kcal Electronic energy + Delta-G solvation = -14314.225024 eV Core-core repulsion = 12024.243809 eV Total energy + Delta-G solvation = -2289.981214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30501 -36.90705 -35.21441 -33.67183 -32.74592 -29.53602 -28.34154 -25.63293 -23.66579 -23.14943 -21.31814 -20.76576 -18.89410 -17.13646 -16.99777 -16.31841 -16.18379 -15.59207 -15.20235 -14.84132 -14.72796 -14.50611 -14.25824 -13.69829 -13.45202 -13.15919 -12.74538 -12.59723 -12.24245 -11.97617 -11.79178 -11.70938 -11.66712 -11.40307 -11.38108 -11.08584 -10.76182 -9.59464 -9.26471 -8.29989 -6.34290 1.35909 1.37519 1.49715 2.36100 2.84629 3.05356 3.67740 3.81796 3.90949 4.07614 4.13031 4.22387 4.32487 4.43819 4.57216 4.61307 4.67544 4.70404 4.87222 4.94467 4.96040 5.02968 5.05421 5.10187 5.22745 5.37593 5.48318 5.58073 5.65015 6.08625 6.14181 6.27789 6.29167 6.61754 6.73646 7.30404 8.87023 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.060179 B = 0.005725 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.164696 B = 4890.038048 C = 5251.816162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.247 1.247 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.010 4.010 10 C -0.094 4.094 11 C 0.065 3.935 12 N -0.544 5.544 13 C 0.044 3.956 14 C -0.110 4.110 15 C -0.146 4.146 16 C 0.100 3.900 17 H 0.079 0.921 18 N -0.847 5.847 19 C 0.064 3.936 20 H 0.266 0.734 21 H 0.018 0.982 22 H 0.020 0.980 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.353 0.647 34 H 0.344 0.656 35 H 0.029 0.971 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.567 -11.009 -2.932 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.171 1.171 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.132 4.132 11 C -0.063 4.063 12 N -0.269 5.269 13 C -0.084 4.084 14 C -0.149 4.149 15 C -0.186 4.186 16 C -0.012 4.012 17 H 0.097 0.903 18 N -0.377 5.377 19 C -0.064 4.064 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.047 0.953 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.430 -10.627 -1.835 21.353 hybrid contribution -0.618 0.534 -1.559 1.760 sum 17.812 -10.093 -3.394 20.752 Atomic orbital electron populations 1.70077 1.08350 1.28195 1.52708 1.26050 0.95640 1.03629 0.94042 0.85615 0.79422 0.78041 0.79301 1.19020 1.17057 1.20885 1.21494 0.92153 0.93087 1.50408 0.95174 1.19495 0.93897 0.94936 0.96487 1.21439 0.93710 0.97166 1.00870 1.22084 0.94931 0.88630 1.00631 1.61913 1.04078 1.10861 1.50003 1.22265 0.99028 0.94360 0.92751 1.21512 0.96166 0.94521 1.02652 1.22396 0.95750 1.00898 0.99513 1.21306 0.87052 0.93641 0.99170 0.90266 1.58783 1.12556 1.28382 1.37992 1.22035 0.87273 0.97599 0.99510 0.92472 0.96341 0.96195 0.93103 0.92979 0.95089 0.90535 0.91108 0.95493 0.90407 0.91397 0.92176 0.90288 0.83258 0.84287 0.95310 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.49 4.04 29.84 0.12 -0.37 16 10 C -0.09 -3.80 4.40 30.59 0.13 -3.67 16 11 C 0.06 2.13 5.27 86.31 0.46 2.58 16 12 N -0.54 -15.61 4.81 -896.35 -4.31 -19.91 16 13 C 0.04 1.19 4.85 86.33 0.42 1.61 16 14 C -0.11 -2.30 6.09 30.65 0.19 -2.11 16 15 C -0.15 -2.49 5.57 30.67 0.17 -2.32 16 16 C 0.10 1.93 3.41 44.97 0.15 2.08 16 17 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 18 N -0.85 -13.08 9.26 -168.45 -1.56 -14.64 16 19 C 0.06 1.53 4.97 86.33 0.43 1.96 16 20 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 21 H 0.02 0.86 7.19 -2.39 -0.02 0.85 16 22 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 2.12 6.21 -2.39 -0.01 2.11 16 25 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 2.19 5.81 -2.39 -0.01 2.18 16 28 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.35 4.10 9.04 -89.69 -0.81 3.29 16 34 H 0.34 4.64 8.98 -89.69 -0.81 3.83 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 Total: -1.00 -65.99 280.57 -1.53 -67.51 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.62 Total: 11.72 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.78 Total: -30.97 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.57 Total: -95.10 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -65.99 -1.53 -67.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041029840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.040 kcal (2) G-P(sol) polarization free energy of solvation -65.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds