Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00347 * 2 1 4 4 H 1.48497 * 109.47515 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46962 * 300.00144 * 3 2 1 6 6 H 1.48503 * 109.47008 * 59.99749 * 3 2 1 7 7 C 1.37880 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99716 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46788 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99935 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47277 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46850 * 180.02562 * 12 11 10 14 14 C 1.46845 * 111.00565 * 45.79157 * 13 12 11 15 15 C 1.53034 * 109.52676 * 185.84030 * 14 13 12 16 16 C 1.53126 * 109.27454 * 300.81918 * 15 14 13 17 17 C 1.53119 * 109.16048 * 57.65518 * 16 15 14 18 18 C 1.46850 * 110.99813 * 170.00223 * 13 12 11 19 19 H 0.97000 * 120.00013 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47347 * 60.00129 * 9 7 2 21 21 H 1.09000 * 109.46835 * 299.99264 * 9 7 2 22 22 H 1.00900 * 111.00106 * 56.04885 * 10 9 7 23 23 H 1.09006 * 109.46860 * 60.00105 * 11 10 9 24 24 H 1.08999 * 109.47090 * 300.00457 * 11 10 9 25 25 H 1.08995 * 109.46637 * 60.00046 * 12 11 10 26 26 H 1.09001 * 109.46762 * 300.00003 * 12 11 10 27 27 H 1.08995 * 109.46315 * 65.81881 * 14 13 12 28 28 H 1.09005 * 109.45975 * 305.85394 * 14 13 12 29 29 H 1.08997 * 109.50792 * 180.88024 * 15 14 13 30 30 H 1.09006 * 109.50471 * 60.75677 * 15 14 13 31 31 H 1.08999 * 109.52028 * 177.55723 * 16 15 14 32 32 H 1.08993 * 109.52259 * 297.74866 * 16 15 14 33 33 H 1.09004 * 109.50440 * 62.28501 * 17 16 15 34 34 H 1.09003 * 109.50154 * 182.40625 * 17 16 15 35 35 H 1.09005 * 109.46186 * 54.13967 * 18 13 12 36 36 H 1.08998 * 109.46012 * 294.17361 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.5302 -6.0431 0.0005 13 7 1.8298 -7.3343 0.0005 14 6 0.7382 -7.3411 -0.9817 15 6 -0.0577 -8.6418 -0.8530 16 6 0.8762 -9.8316 -1.0918 17 6 2.0303 -9.7741 -0.0872 18 6 2.7656 -8.4406 -0.2382 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 2.8404 -3.5487 0.7819 23 1 0.8801 -4.9817 -0.8887 24 1 0.8806 -4.9812 0.8913 25 1 3.1556 -5.9685 0.8900 26 1 3.1544 -5.9687 -0.8900 27 1 1.1535 -7.2674 -1.9868 28 1 0.0792 -6.4924 -0.7981 29 1 -0.8582 -8.6534 -1.5926 30 1 -0.4849 -8.7096 0.1476 31 1 0.3231 -10.7613 -0.9584 32 1 1.2732 -9.7852 -2.1058 33 1 1.6360 -9.8597 0.9254 34 1 2.7216 -10.5947 -0.2798 35 1 3.5793 -8.3905 0.4855 36 1 3.1715 -8.3617 -1.2467 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -11.701838 kcal Electronic energy + Delta-G solvation = -14093.704249 eV Core-core repulsion = 11804.883893 eV Total energy + Delta-G solvation = -2288.820355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.04715 -35.64014 -33.50281 -32.14371 -30.88938 -28.40802 -25.76287 -23.90310 -22.98608 -21.46021 -20.67446 -19.63386 -16.39199 -16.11219 -15.22987 -14.93281 -14.56262 -14.42766 -13.85928 -13.56631 -13.44536 -12.96995 -12.40718 -12.18808 -12.09288 -11.61670 -11.24681 -11.13010 -10.92805 -10.78711 -10.64171 -10.55437 -10.38701 -10.12389 -9.84114 -9.15416 -8.47804 -8.18461 -7.29151 -6.02383 -4.04351 3.31846 3.38847 3.44200 3.95478 4.44728 4.74874 4.81134 4.86467 5.14361 5.31799 5.33599 5.41792 5.47958 5.50602 5.57946 5.63319 5.77054 5.82588 5.87800 5.93677 5.99409 6.05518 6.17491 6.29292 6.41510 6.44573 7.15992 7.22274 7.29351 7.43976 7.79718 8.13517 8.39859 8.62346 9.05244 9.60619 11.08897 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.078836 B = 0.004810 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.082188 B = 5819.852915 C = 6076.884273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.056 3.944 12 C 0.059 3.941 13 N -0.539 5.539 14 C 0.047 3.953 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.116 4.116 18 C 0.056 3.944 19 H 0.261 0.739 20 H 0.027 0.973 21 H -0.013 1.013 22 H 0.328 0.672 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -17.753 -0.840 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.322 5.322 11 C -0.074 4.074 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.073 4.073 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.005 0.995 22 H 0.144 0.856 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.126 -17.679 -1.072 17.839 hybrid contribution 0.382 1.048 0.083 1.118 sum 2.508 -16.631 -0.989 16.849 Atomic orbital electron populations 1.69974 1.06105 1.26682 1.51010 1.24998 0.94880 0.99399 0.95340 0.86421 0.80064 0.83299 0.77506 1.19639 1.20988 1.21069 1.21235 0.93574 0.90237 1.50213 0.91884 1.19550 0.90583 0.87313 0.95790 1.60666 1.21357 1.01267 1.48904 1.22003 0.95349 0.89824 1.00206 1.22095 0.96272 0.87550 1.00950 1.61966 1.11556 1.03070 1.49814 1.22222 0.93954 0.98574 0.93326 1.21603 0.97590 0.94049 1.02275 1.21583 0.96967 0.98298 0.99051 1.21578 0.97359 0.96220 1.00221 1.22062 0.94698 0.91021 0.99474 0.92961 0.95504 0.99503 0.85561 0.91640 0.95533 0.91069 0.94212 0.95006 0.89718 0.91722 0.91178 0.92094 0.92441 0.91179 0.91879 0.90959 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.86 9.32 -34.44 -0.32 -15.18 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.24 5.44 -4.97 -0.03 5.22 16 10 N -0.69 -15.33 6.49 -115.05 -0.75 -16.07 16 11 C 0.06 1.05 4.94 -3.82 -0.02 1.03 16 12 C 0.06 0.91 5.53 -3.82 -0.02 0.89 16 13 N -0.54 -7.46 4.81 -234.67 -1.13 -8.58 16 14 C 0.05 0.62 4.85 -3.84 -0.02 0.60 16 15 C -0.12 -1.27 6.09 -26.65 -0.16 -1.44 16 16 C -0.12 -1.16 6.00 -26.60 -0.16 -1.32 16 17 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 18 C 0.06 0.64 5.42 -3.83 -0.02 0.62 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 21 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 22 H 0.33 6.91 8.72 -39.29 -0.34 6.57 16 23 H 0.07 1.24 6.21 -51.93 -0.32 0.91 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.22 5.81 -51.93 -0.30 0.91 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -30.15 285.35 -9.29 -39.44 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.43 Total: -0.12 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.01 Total: -9.37 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -1.14 Total: -51.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.15 -9.29 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.742 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds