Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00347 * 2 1 4 4 H 1.48497 * 109.47515 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46962 * 300.00144 * 3 2 1 6 6 H 1.48503 * 109.47008 * 59.99749 * 3 2 1 7 7 C 1.37880 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99716 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46788 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99935 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47277 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46850 * 180.02562 * 12 11 10 14 14 C 1.46845 * 111.00565 * 45.79157 * 13 12 11 15 15 C 1.53034 * 109.52676 * 185.84030 * 14 13 12 16 16 C 1.53126 * 109.27454 * 300.81918 * 15 14 13 17 17 C 1.53119 * 109.16048 * 57.65518 * 16 15 14 18 18 C 1.46850 * 110.99813 * 170.00223 * 13 12 11 19 19 H 0.97000 * 120.00013 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47347 * 60.00129 * 9 7 2 21 21 H 1.09000 * 109.46835 * 299.99264 * 9 7 2 22 22 H 1.00900 * 111.00106 * 56.04885 * 10 9 7 23 23 H 1.09006 * 109.46860 * 60.00105 * 11 10 9 24 24 H 1.08999 * 109.47090 * 300.00457 * 11 10 9 25 25 H 1.08995 * 109.46637 * 60.00046 * 12 11 10 26 26 H 1.09001 * 109.46762 * 300.00003 * 12 11 10 27 27 H 1.08995 * 109.46315 * 65.81881 * 14 13 12 28 28 H 1.09005 * 109.45975 * 305.85394 * 14 13 12 29 29 H 1.08997 * 109.50792 * 180.88024 * 15 14 13 30 30 H 1.09006 * 109.50471 * 60.75677 * 15 14 13 31 31 H 1.08999 * 109.52028 * 177.55723 * 16 15 14 32 32 H 1.08993 * 109.52259 * 297.74866 * 16 15 14 33 33 H 1.09004 * 109.50440 * 62.28501 * 17 16 15 34 34 H 1.09003 * 109.50154 * 182.40625 * 17 16 15 35 35 H 1.09005 * 109.46186 * 54.13967 * 18 13 12 36 36 H 1.08998 * 109.46012 * 294.17361 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9070 0.0011 12 6 2.5302 -6.0431 0.0005 13 7 1.8298 -7.3343 0.0005 14 6 0.7382 -7.3411 -0.9817 15 6 -0.0577 -8.6418 -0.8530 16 6 0.8762 -9.8316 -1.0918 17 6 2.0303 -9.7741 -0.0872 18 6 2.7656 -8.4406 -0.2382 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 2.8404 -3.5487 0.7819 23 1 0.8801 -4.9817 -0.8887 24 1 0.8806 -4.9812 0.8913 25 1 3.1556 -5.9685 0.8900 26 1 3.1544 -5.9687 -0.8900 27 1 1.1535 -7.2674 -1.9868 28 1 0.0792 -6.4924 -0.7981 29 1 -0.8582 -8.6534 -1.5926 30 1 -0.4849 -8.7096 0.1476 31 1 0.3231 -10.7613 -0.9584 32 1 1.2732 -9.7852 -2.1058 33 1 1.6360 -9.8597 0.9254 34 1 2.7216 -10.5947 -0.2798 35 1 3.5793 -8.3905 0.4855 36 1 3.1715 -8.3617 -1.2467 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -33.059878 kcal Electronic energy + Delta-G solvation = -14094.630403 eV Core-core repulsion = 11804.883893 eV Total energy + Delta-G solvation = -2289.746510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09368 -37.30307 -35.09145 -33.90636 -31.83073 -30.08374 -27.51018 -25.17522 -24.07006 -23.36539 -21.98996 -20.57767 -18.56857 -17.25389 -16.91800 -16.42538 -16.03877 -15.34080 -15.15031 -14.92557 -14.78302 -14.29857 -14.00170 -13.69628 -13.57008 -12.98687 -12.90634 -12.63090 -12.37295 -12.20059 -12.11103 -11.99587 -11.57797 -11.32195 -11.24690 -11.07855 -10.68833 -9.30034 -9.19468 -8.24410 -6.36288 1.41312 1.42086 1.56353 2.39124 2.83414 3.09061 3.68178 3.86214 3.91145 4.05389 4.12280 4.22343 4.35201 4.47527 4.53850 4.62345 4.66907 4.81179 4.91886 4.94460 4.96179 5.05948 5.07848 5.11228 5.22086 5.22916 5.30395 5.48673 5.59137 5.96892 6.07846 6.17510 6.39061 6.68005 6.85810 7.35005 8.87791 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.078836 B = 0.004810 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.082188 B = 5819.852915 C = 6076.884273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.688 5.688 11 C 0.062 3.938 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.045 3.955 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.112 4.112 18 C 0.052 3.948 19 H 0.266 0.734 20 H -0.002 1.002 21 H -0.039 1.039 22 H 0.337 0.663 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -18.479 -0.848 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.319 5.319 11 C -0.068 4.068 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.083 4.083 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.076 4.076 19 H 0.075 0.925 20 H 0.017 0.983 21 H -0.021 1.021 22 H 0.154 0.846 23 H 0.077 0.923 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.332 -18.439 -1.077 18.768 hybrid contribution -0.027 1.212 0.080 1.215 sum 3.305 -17.226 -0.997 17.569 Atomic orbital electron populations 1.70101 1.07913 1.28060 1.51441 1.25998 0.95814 1.03548 0.94416 0.85225 0.78911 0.77976 0.77809 1.18539 1.20313 1.20179 1.21579 0.93906 0.91307 1.50787 0.91546 1.19207 0.90626 0.88931 0.93169 1.60536 1.20599 1.01481 1.49330 1.21996 0.95993 0.89308 0.99467 1.21888 0.95141 0.87356 1.01196 1.62007 1.12082 1.02786 1.50217 1.22237 0.93787 0.99370 0.92928 1.21593 0.97880 0.93345 1.02400 1.21589 0.96739 0.98255 0.99106 1.21580 0.97669 0.95642 1.00102 1.22191 0.94696 0.90998 0.99675 0.92531 0.98347 1.02127 0.84619 0.92347 0.96325 0.90195 0.94539 0.95420 0.91688 0.90643 0.91632 0.90303 0.92223 0.91504 0.89721 0.90226 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.16 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.62 5.44 85.56 0.47 12.08 16 10 N -0.69 -30.98 6.49 -517.92 -3.36 -34.34 16 11 C 0.06 2.35 4.94 86.30 0.43 2.78 16 12 C 0.07 2.20 5.53 86.30 0.48 2.67 16 13 N -0.55 -14.63 4.81 -896.37 -4.31 -18.94 16 14 C 0.04 1.17 4.85 86.33 0.42 1.59 16 15 C -0.11 -2.34 6.09 30.65 0.19 -2.16 16 16 C -0.12 -2.00 6.00 30.68 0.18 -1.81 16 17 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 18 C 0.05 1.11 5.42 86.32 0.47 1.58 16 19 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 20 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 21 H -0.04 -2.33 8.14 -2.39 -0.02 -2.35 16 22 H 0.34 14.18 8.72 -89.69 -0.78 13.40 16 23 H 0.06 2.29 6.21 -2.38 -0.01 2.27 16 24 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.93 5.81 -2.38 -0.01 1.91 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.58 8.12 -2.38 -0.02 1.56 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -64.32 285.35 -1.60 -65.92 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.24 Total: 13.43 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.51 Total: -15.66 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -7.38 Total: -110.42 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.32 -1.60 -65.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.856 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds