Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 N 1.46903 * 109.46742 * 294.71184 * 15 14 13 17 17 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 18 18 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 23 23 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 24 24 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 25 25 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 26 26 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 27 27 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 28 28 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 29 29 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 30 30 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 31 31 H 1.00903 * 110.99979 * 180.02562 * 16 15 14 32 32 H 1.00895 * 111.00112 * 303.95433 * 16 15 14 33 33 H 1.09005 * 109.50073 * 297.71107 * 17 14 13 34 34 H 1.08991 * 109.50379 * 177.59621 * 17 14 13 35 35 H 1.08989 * 109.46428 * 305.85572 * 18 11 10 36 36 H 1.09002 * 109.45912 * 65.83533 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 7 -0.7467 -9.1226 2.0180 17 6 1.6025 -7.3529 -0.3779 18 6 2.4172 -6.0650 -0.2392 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6042 -0.8905 23 1 2.8721 -3.6043 0.8895 24 1 1.4582 -5.2089 2.0805 25 1 0.1214 -4.2418 1.4133 26 1 -0.8110 -6.2639 0.3319 27 1 -0.6487 -6.5069 2.0884 28 1 1.4778 -7.7099 1.7446 29 1 -0.8077 -8.6728 -0.0332 30 1 0.5677 -9.6810 0.4771 31 1 -1.3226 -9.9477 1.9414 32 1 -0.0825 -9.2144 2.7720 33 1 0.9220 -7.2637 -1.2248 34 1 2.2764 -8.1942 -0.5390 35 1 2.9813 -5.8916 -1.1555 36 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044514303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = -20.607981 kcal Electronic energy + Delta-G solvation = -14373.894906 eV Core-core repulsion = 12084.688352 eV Total energy + Delta-G solvation = -2289.206555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.87229 -35.66599 -33.30800 -31.94216 -30.45762 -29.12744 -25.83208 -23.72261 -22.87377 -21.43578 -20.02865 -19.41463 -16.49223 -15.94643 -14.87366 -14.72548 -14.54955 -14.48708 -14.34433 -13.70364 -12.87690 -12.68853 -12.46276 -12.12158 -11.91677 -11.54349 -11.08569 -10.88775 -10.85769 -10.59631 -10.44041 -10.20589 -10.01844 -9.71860 -9.25098 -9.06180 -8.77135 -8.28266 -7.60358 -5.95113 -3.97393 3.34960 3.40890 3.44120 4.42345 4.43850 4.61737 4.87538 4.99932 5.13728 5.40554 5.47171 5.56528 5.60167 5.73448 5.77108 5.89738 6.02630 6.11007 6.21950 6.22955 6.35965 6.46420 6.55809 6.64824 6.72989 6.99579 7.04447 7.28323 7.60937 7.69570 7.87773 7.97640 8.14989 8.49038 9.10038 9.65939 11.16324 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065416 B = 0.005662 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.924105 B = 4944.471427 C = 5213.625131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.053 3.947 13 C -0.099 4.099 14 C -0.086 4.086 15 C 0.067 3.933 16 N -0.849 5.849 17 C -0.110 4.110 18 C 0.056 3.944 19 H 0.260 0.740 20 H 0.024 0.976 21 H 0.017 0.983 22 H 0.059 0.941 23 H 0.017 0.983 24 H 0.021 0.979 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.338 0.662 32 H 0.338 0.662 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -16.760 2.055 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.075 4.075 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.063 4.063 16 N -0.378 5.378 17 C -0.148 4.148 18 C -0.072 4.072 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.036 0.964 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.642 -15.915 1.562 16.004 hybrid contribution 1.649 0.031 0.636 1.768 sum 2.291 -15.884 2.199 16.198 Atomic orbital electron populations 1.69972 1.06011 1.26522 1.50747 1.24987 0.94815 0.99123 0.95362 0.86607 0.79804 0.83564 0.78083 1.20659 1.21236 1.19966 1.21208 0.92958 0.91135 1.50746 0.92864 1.19101 0.93994 0.90083 0.97789 1.22314 0.96721 0.88606 0.98734 1.62025 1.27260 1.02221 1.34793 1.22146 0.96779 0.98741 0.89844 1.21521 0.97423 0.92496 1.02287 1.21217 0.96646 0.94878 0.97768 1.21857 0.96475 0.96062 0.91945 1.58679 1.27926 1.44810 1.06385 1.21598 0.98699 0.96570 0.97923 1.22012 0.94003 0.91235 0.99987 0.93025 0.95735 0.96446 0.92260 0.96448 0.96074 0.89631 0.91511 0.91106 0.92129 0.90921 0.96065 0.85039 0.84998 0.91062 0.92443 0.91244 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.74 4.90 -27.88 -0.14 0.61 16 10 C 0.06 1.39 4.90 -3.82 -0.02 1.37 16 11 N -0.54 -10.28 4.66 -234.67 -1.09 -11.37 16 12 C 0.05 0.95 5.29 -3.84 -0.02 0.93 16 13 C -0.10 -1.48 5.24 -26.65 -0.14 -1.62 16 14 C -0.09 -1.07 2.39 -90.49 -0.22 -1.29 16 15 C 0.07 0.70 6.18 -3.82 -0.02 0.68 16 16 N -0.85 -8.06 9.15 -10.37 -0.09 -8.16 16 17 C -0.11 -1.40 5.38 -26.65 -0.14 -1.55 16 18 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 19 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 20 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.02 0.49 6.43 -51.93 -0.33 0.16 16 22 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 23 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 1.74 6.21 -51.93 -0.32 1.42 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.34 2.55 9.08 -39.29 -0.36 2.19 16 32 H 0.34 2.86 8.99 -39.29 -0.35 2.51 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.05 8.01 -51.94 -0.42 0.63 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -30.64 284.27 -8.69 -39.34 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.37 Total: -0.59 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.13 Total: -13.84 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.45 Total: -46.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.64 -8.69 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044514303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.728 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds