Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 N 1.46903 * 109.46742 * 294.71184 * 15 14 13 17 17 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 18 18 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 23 23 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 24 24 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 25 25 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 26 26 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 27 27 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 28 28 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 29 29 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 30 30 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 31 31 H 1.00903 * 110.99979 * 180.02562 * 16 15 14 32 32 H 1.00895 * 111.00112 * 303.95433 * 16 15 14 33 33 H 1.09005 * 109.50073 * 297.71107 * 17 14 13 34 34 H 1.08991 * 109.50379 * 177.59621 * 17 14 13 35 35 H 1.08989 * 109.46428 * 305.85572 * 18 11 10 36 36 H 1.09002 * 109.45912 * 65.83533 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 7 -0.7467 -9.1226 2.0180 17 6 1.6025 -7.3529 -0.3779 18 6 2.4172 -6.0650 -0.2392 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6042 -0.8905 23 1 2.8721 -3.6043 0.8895 24 1 1.4582 -5.2089 2.0805 25 1 0.1214 -4.2418 1.4133 26 1 -0.8110 -6.2639 0.3319 27 1 -0.6487 -6.5069 2.0884 28 1 1.4778 -7.7099 1.7446 29 1 -0.8077 -8.6728 -0.0332 30 1 0.5677 -9.6810 0.4771 31 1 -1.3226 -9.9477 1.9414 32 1 -0.0825 -9.2144 2.7720 33 1 0.9220 -7.2637 -1.2248 34 1 2.2764 -8.1942 -0.5390 35 1 2.9813 -5.8916 -1.1555 36 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044514303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -42.854533 kcal Electronic energy + Delta-G solvation = -14374.859589 eV Core-core repulsion = 12084.688352 eV Total energy + Delta-G solvation = -2290.171238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16894 -36.92400 -35.19885 -33.39263 -31.73205 -30.90992 -27.34453 -25.42555 -24.20829 -22.71222 -21.71061 -20.63967 -18.60415 -17.03747 -16.56097 -16.12842 -16.03565 -15.57980 -15.46595 -15.18445 -14.46376 -14.30829 -13.91097 -13.58209 -13.21405 -12.98640 -12.93382 -12.67337 -12.43271 -12.09085 -11.87271 -11.71467 -11.45534 -11.33908 -11.10647 -10.99724 -10.53130 -9.49828 -9.14387 -8.19899 -6.31876 1.39927 1.42074 1.52987 2.40439 3.11123 3.13240 3.62971 3.84816 3.91685 4.10332 4.31541 4.39258 4.47573 4.51154 4.60745 4.65421 4.75489 4.80348 4.89972 4.99016 5.04758 5.06911 5.16085 5.26184 5.35212 5.45072 5.54241 5.67483 5.79357 6.12344 6.30455 6.35191 6.39201 6.67446 6.85325 7.37338 8.92485 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065416 B = 0.005662 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.924105 B = 4944.471427 C = 5213.625131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.079 3.921 11 N -0.551 5.551 12 C 0.055 3.945 13 C -0.090 4.090 14 C -0.080 4.080 15 C 0.074 3.926 16 N -0.860 5.860 17 C -0.103 4.103 18 C 0.053 3.947 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.008 1.008 22 H 0.064 0.936 23 H 0.016 0.984 24 H 0.024 0.976 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.350 0.650 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -17.914 2.113 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.049 4.049 11 N -0.276 5.276 12 C -0.073 4.073 13 C -0.127 4.127 14 C -0.099 4.099 15 C -0.057 4.057 16 N -0.391 5.391 17 C -0.141 4.141 18 C -0.075 4.075 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.011 0.989 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.989 -17.101 1.622 17.293 hybrid contribution 1.189 0.364 0.631 1.394 sum 3.178 -16.738 2.253 17.185 Atomic orbital electron populations 1.70116 1.07909 1.27820 1.51402 1.25986 0.95749 1.03402 0.94535 0.85402 0.78590 0.78182 0.78576 1.19622 1.20644 1.18707 1.21633 0.93511 0.92298 1.51021 0.92180 1.18924 0.94215 0.92067 0.94908 1.21963 0.95362 0.88738 0.98832 1.61958 1.28028 1.02265 1.35374 1.22100 0.96627 0.98961 0.89638 1.21421 0.97104 0.92256 1.01963 1.21169 0.96457 0.94468 0.97846 1.21719 0.96271 0.95458 0.92208 1.58633 1.28374 1.45821 1.06269 1.21578 0.98818 0.95958 0.97779 1.22159 0.93993 0.90922 1.00423 0.92724 0.99101 0.98927 0.91772 0.96541 0.95759 0.93268 0.92885 0.90697 0.91505 0.91603 0.94062 0.83687 0.84226 0.91677 0.89273 0.90694 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.04 2.03 4.90 29.85 0.15 2.18 16 10 C 0.08 3.53 4.90 86.31 0.42 3.96 16 11 N -0.55 -21.22 4.66 -896.37 -4.17 -25.39 16 12 C 0.05 2.02 5.29 86.32 0.46 2.47 16 13 C -0.09 -2.64 5.24 30.65 0.16 -2.48 16 14 C -0.08 -1.82 2.39 -10.71 -0.03 -1.85 16 15 C 0.07 1.34 6.18 86.30 0.53 1.87 16 16 N -0.86 -14.30 9.15 -186.71 -1.71 -16.00 16 17 C -0.10 -2.37 5.38 30.65 0.16 -2.21 16 18 C 0.05 1.55 5.46 86.32 0.47 2.02 16 19 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 20 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 21 H -0.01 -0.46 6.43 -2.39 -0.02 -0.47 16 22 H 0.06 2.79 7.99 -2.39 -0.02 2.77 16 23 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 24 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 2.14 6.21 -2.39 -0.01 2.12 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 2.14 7.84 -2.39 -0.02 2.12 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.35 4.44 9.08 -89.69 -0.81 3.62 16 32 H 0.34 4.97 8.99 -89.70 -0.81 4.16 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -66.91 284.27 -1.12 -68.03 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.57 Total: 9.88 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.03 Total: -25.51 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -5.60 Total: -99.58 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.91 -1.12 -68.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044514303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.174 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds