Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48509 * 109.46921 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47315 * 119.99727 * 3 2 1 7 7 C 1.37882 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99610 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47059 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46929 * 110.98461 * 314.22850 * 11 10 9 13 13 C 1.53037 * 109.47910 * 174.18240 * 12 11 10 14 14 C 1.53114 * 109.31211 * 59.15772 * 13 12 11 15 15 C 1.53126 * 109.16239 * 302.32855 * 14 13 12 16 16 H 1.09006 * 109.49902 * 297.71480 * 15 14 13 17 17 C 1.53001 * 109.50609 * 177.63506 * 15 14 13 18 18 N 1.46898 * 109.46735 * 64.99648 * 17 15 14 19 19 C 1.46850 * 110.99740 * 190.00065 * 11 10 9 20 20 H 0.97009 * 120.00033 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46912 * 59.99827 * 9 7 2 22 22 H 1.08998 * 109.47385 * 300.00013 * 9 7 2 23 23 H 1.08995 * 109.46922 * 59.99836 * 10 9 7 24 24 H 1.09003 * 109.46861 * 299.99845 * 10 9 7 25 25 H 1.08994 * 109.51866 * 54.15475 * 12 11 10 26 26 H 1.09007 * 109.45009 * 294.16157 * 12 11 10 27 27 H 1.09002 * 109.50283 * 299.19589 * 13 12 11 28 28 H 1.09003 * 109.50113 * 179.11776 * 13 12 11 29 29 H 1.09006 * 109.52545 * 62.23190 * 14 13 12 30 30 H 1.09002 * 109.52724 * 182.41937 * 14 13 12 31 31 H 1.08999 * 109.46986 * 184.99962 * 17 15 14 32 32 H 1.08998 * 109.46928 * 304.99736 * 17 15 14 33 33 H 1.00903 * 110.99659 * 179.97438 * 18 17 15 34 34 H 1.00892 * 111.00461 * 303.95448 * 18 17 15 35 35 H 1.08997 * 109.46198 * 65.82029 * 19 11 10 36 36 H 1.08995 * 109.45893 * 305.84904 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5106 -4.9343 -0.0001 12 6 0.4185 -4.9118 0.9826 13 6 -0.4111 -6.1913 0.8530 14 6 0.4906 -7.4057 1.0911 15 6 1.6459 -7.3786 0.0865 16 1 1.2493 -7.4531 -0.9261 17 6 2.5845 -8.5566 0.3554 18 7 1.8750 -9.8167 0.0975 19 6 2.4166 -6.0652 0.2380 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5568 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8717 -3.6044 -0.8895 25 1 -0.2181 -4.0462 0.7998 26 1 0.8358 -4.8498 1.9877 27 1 -0.8400 -6.2472 -0.1475 28 1 -1.2120 -6.1822 1.5923 29 1 0.8889 -7.3704 2.1052 30 1 -0.0871 -8.3203 0.9574 31 1 3.4521 -8.4870 -0.3008 32 1 2.9121 -8.5301 1.3947 33 1 2.4743 -10.6105 0.2678 34 1 1.0313 -9.8758 0.6475 35 1 2.8245 -5.9977 1.2465 36 1 3.2311 -6.0365 -0.4858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044531211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -18.078267 kcal Electronic energy + Delta-G solvation = -14442.177747 eV Core-core repulsion = 12153.080889 eV Total energy + Delta-G solvation = -2289.096858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97406 -35.61739 -33.37981 -32.19411 -30.53720 -28.92328 -25.27845 -24.64045 -22.59305 -21.89821 -19.64462 -19.29267 -16.53167 -16.06405 -15.29180 -14.90008 -14.49721 -14.31940 -13.89693 -13.59610 -13.50986 -12.65280 -12.52660 -12.13180 -12.02227 -11.48505 -11.04983 -10.91520 -10.85573 -10.57575 -10.54950 -10.18951 -9.98731 -9.83059 -9.26869 -9.05705 -8.82163 -8.32602 -7.63066 -5.99054 -4.01304 3.34204 3.38462 3.40947 4.28627 4.47732 4.67401 4.86588 5.02392 5.10242 5.36712 5.43004 5.48957 5.68683 5.69471 5.74596 5.85169 5.98190 6.04829 6.15698 6.24006 6.37050 6.43303 6.49156 6.64556 6.68318 6.96158 6.99410 7.27173 7.56196 7.66262 7.83983 7.88121 8.07335 8.44639 9.05115 9.62211 11.12330 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069573 B = 0.005779 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.355622 B = 4844.274929 C = 5146.464824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.050 3.950 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.084 4.084 16 H 0.086 0.914 17 C 0.067 3.933 18 N -0.851 5.851 19 C 0.062 3.938 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.020 0.980 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.023 0.977 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.337 0.663 34 H 0.339 0.661 35 H 0.024 0.976 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -15.568 2.847 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.078 4.078 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.103 4.103 16 H 0.105 0.895 17 C -0.064 4.064 18 N -0.381 5.381 19 C -0.067 4.067 20 H 0.071 0.929 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.042 0.958 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.857 -15.229 1.635 15.428 hybrid contribution 1.065 0.882 1.871 2.327 sum 2.922 -14.347 3.507 15.055 Atomic orbital electron populations 1.69956 1.06025 1.26705 1.50635 1.24988 0.94836 0.99168 0.95274 0.86650 0.79575 0.83119 0.78595 1.20201 1.21264 1.20324 1.21158 0.92971 0.91047 1.50932 0.92830 1.19240 0.94122 0.90481 0.97778 1.22311 0.97015 0.88207 0.98883 1.62025 1.11543 1.03362 1.49329 1.22211 0.94128 0.98520 0.92909 1.21591 0.97475 0.94191 1.02113 1.21631 0.96919 0.98330 0.98343 1.21206 0.95285 0.92824 1.00956 0.89547 1.21802 0.96731 0.89505 0.98408 1.58723 1.10311 1.03981 1.65053 1.22011 0.95024 0.90756 0.98916 0.92936 0.95664 0.96159 0.96386 0.91972 0.88827 0.95839 0.91179 0.92070 0.92959 0.92267 0.91042 0.95861 0.85068 0.84735 0.95812 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 10 C 0.06 1.37 5.21 -3.82 -0.02 1.35 16 11 N -0.54 -10.19 4.81 -234.60 -1.13 -11.32 16 12 C 0.05 0.91 4.85 -3.79 -0.02 0.89 16 13 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 14 C -0.11 -1.43 5.00 -26.61 -0.13 -1.56 16 15 C -0.08 -1.10 2.56 -90.54 -0.23 -1.33 16 16 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 17 C 0.07 0.72 6.25 -3.82 -0.02 0.70 16 18 N -0.85 -8.18 9.62 -10.37 -0.10 -8.28 16 19 C 0.06 0.96 4.71 -3.83 -0.02 0.95 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 23 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.93 5.82 -51.93 -0.30 1.62 16 26 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 6.80 -51.93 -0.35 0.29 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.34 2.57 9.08 -39.29 -0.36 2.21 16 34 H 0.34 2.98 7.30 -39.30 -0.29 2.69 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -30.05 280.91 -8.65 -38.70 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.23 Total: 0.24 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.14 Total: -14.10 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.49 Total: -45.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.05 -8.65 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.622 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds