Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48509 * 109.46921 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47315 * 119.99727 * 3 2 1 7 7 C 1.37882 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99610 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47059 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46929 * 110.98461 * 314.22850 * 11 10 9 13 13 C 1.53037 * 109.47910 * 174.18240 * 12 11 10 14 14 C 1.53114 * 109.31211 * 59.15772 * 13 12 11 15 15 C 1.53126 * 109.16239 * 302.32855 * 14 13 12 16 16 H 1.09006 * 109.49902 * 297.71480 * 15 14 13 17 17 C 1.53001 * 109.50609 * 177.63506 * 15 14 13 18 18 N 1.46898 * 109.46735 * 64.99648 * 17 15 14 19 19 C 1.46850 * 110.99740 * 190.00065 * 11 10 9 20 20 H 0.97009 * 120.00033 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46912 * 59.99827 * 9 7 2 22 22 H 1.08998 * 109.47385 * 300.00013 * 9 7 2 23 23 H 1.08995 * 109.46922 * 59.99836 * 10 9 7 24 24 H 1.09003 * 109.46861 * 299.99845 * 10 9 7 25 25 H 1.08994 * 109.51866 * 54.15475 * 12 11 10 26 26 H 1.09007 * 109.45009 * 294.16157 * 12 11 10 27 27 H 1.09002 * 109.50283 * 299.19589 * 13 12 11 28 28 H 1.09003 * 109.50113 * 179.11776 * 13 12 11 29 29 H 1.09006 * 109.52545 * 62.23190 * 14 13 12 30 30 H 1.09002 * 109.52724 * 182.41937 * 14 13 12 31 31 H 1.08999 * 109.46986 * 184.99962 * 17 15 14 32 32 H 1.08998 * 109.46928 * 304.99736 * 17 15 14 33 33 H 1.00903 * 110.99659 * 179.97438 * 18 17 15 34 34 H 1.00892 * 111.00461 * 303.95448 * 18 17 15 35 35 H 1.08997 * 109.46198 * 65.82029 * 19 11 10 36 36 H 1.08995 * 109.45893 * 305.84904 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5106 -4.9343 -0.0001 12 6 0.4185 -4.9118 0.9826 13 6 -0.4111 -6.1913 0.8530 14 6 0.4906 -7.4057 1.0911 15 6 1.6459 -7.3786 0.0865 16 1 1.2493 -7.4531 -0.9261 17 6 2.5845 -8.5566 0.3554 18 7 1.8750 -9.8167 0.0975 19 6 2.4166 -6.0652 0.2380 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5568 0.8903 23 1 2.8717 -3.6044 0.8905 24 1 2.8717 -3.6044 -0.8895 25 1 -0.2181 -4.0462 0.7998 26 1 0.8358 -4.8498 1.9877 27 1 -0.8400 -6.2472 -0.1475 28 1 -1.2120 -6.1822 1.5923 29 1 0.8889 -7.3704 2.1052 30 1 -0.0871 -8.3203 0.9574 31 1 3.4521 -8.4870 -0.3008 32 1 2.9121 -8.5301 1.3947 33 1 2.4743 -10.6105 0.2678 34 1 1.0313 -9.8758 0.6475 35 1 2.8245 -5.9977 1.2465 36 1 3.2311 -6.0365 -0.4858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044531211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -39.886178 kcal Electronic energy + Delta-G solvation = -14443.123409 eV Core-core repulsion = 12153.080889 eV Total energy + Delta-G solvation = -2290.042520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27971 -36.90423 -35.16660 -33.72606 -31.82827 -30.65115 -26.89989 -26.04688 -24.07457 -23.30274 -21.15802 -20.57802 -18.64050 -17.06535 -16.59912 -16.40702 -16.11433 -15.87744 -15.18345 -14.81469 -14.71467 -14.24550 -14.11374 -13.62870 -13.40710 -12.96781 -12.82766 -12.66701 -12.43499 -12.08395 -11.97411 -11.69912 -11.54838 -11.29605 -11.07958 -10.96316 -10.54025 -9.56551 -9.17231 -8.21084 -6.32740 1.39532 1.42959 1.50921 2.39694 3.02323 3.12119 3.71199 3.82246 3.90215 4.01584 4.29161 4.40962 4.47218 4.50347 4.53755 4.61720 4.67363 4.73301 4.82732 4.96908 5.02688 5.04171 5.13860 5.22979 5.35238 5.42450 5.50610 5.64992 5.77245 6.08364 6.25306 6.32890 6.36107 6.65459 6.83311 7.36284 8.90766 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069573 B = 0.005779 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.355622 B = 4844.274929 C = 5146.464824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.077 3.923 11 N -0.548 5.548 12 C 0.051 3.949 13 C -0.110 4.110 14 C -0.108 4.108 15 C -0.077 4.077 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.856 5.856 19 C 0.061 3.939 20 H 0.264 0.736 21 H -0.008 1.008 22 H 0.001 0.999 23 H 0.018 0.982 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.351 0.649 34 H 0.346 0.654 35 H 0.028 0.972 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 -16.651 3.333 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.273 5.273 12 C -0.077 4.077 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.096 4.096 16 H 0.089 0.911 17 C -0.057 4.057 18 N -0.388 5.388 19 C -0.067 4.067 20 H 0.073 0.927 21 H 0.010 0.990 22 H 0.019 0.981 23 H 0.037 0.963 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.046 0.954 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.918 -16.345 2.124 16.739 hybrid contribution 0.698 1.187 1.711 2.197 sum 3.617 -15.159 3.835 16.049 Atomic orbital electron populations 1.70097 1.07816 1.27898 1.51263 1.25960 0.95763 1.03310 0.94498 0.85476 0.78266 0.77949 0.79191 1.19149 1.20681 1.19162 1.21597 0.93513 0.92308 1.51216 0.92258 1.19053 0.94273 0.92115 0.95204 1.21986 0.95808 0.88397 0.98848 1.61996 1.12176 1.03042 1.50064 1.22159 0.93812 0.99265 0.92434 1.21557 0.97753 0.93212 1.02284 1.21604 0.96425 0.98085 0.98450 1.21119 0.95721 0.92399 1.00348 0.91108 1.21649 0.96065 0.89018 0.98947 1.58669 1.10837 1.03927 1.65387 1.22119 0.94898 0.90508 0.99225 0.92698 0.98976 0.98081 0.96341 0.91932 0.92460 0.96091 0.91968 0.90340 0.92194 0.89799 0.90985 0.94959 0.83572 0.84044 0.95411 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.69 4.22 29.85 0.13 1.82 16 10 C 0.08 3.44 5.21 86.30 0.45 3.89 16 11 N -0.55 -20.97 4.81 -896.14 -4.31 -25.28 16 12 C 0.05 1.89 4.85 86.31 0.42 2.31 16 13 C -0.11 -3.10 6.09 30.64 0.19 -2.91 16 14 C -0.11 -2.43 5.00 30.67 0.15 -2.28 16 15 C -0.08 -1.87 2.56 -10.74 -0.03 -1.89 16 16 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 17 C 0.07 1.42 6.25 86.30 0.54 1.96 16 18 N -0.86 -13.94 9.62 -186.72 -1.80 -15.73 16 19 C 0.06 1.82 4.71 86.33 0.41 2.23 16 20 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 21 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 22 H 0.00 0.06 6.21 -2.39 -0.01 0.04 16 23 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 24 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.06 2.50 5.82 -2.39 -0.01 2.49 16 26 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.08 1.52 6.80 -2.39 -0.02 1.51 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.35 4.28 9.08 -89.69 -0.81 3.46 16 34 H 0.35 4.92 7.30 -89.70 -0.66 4.26 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 Total: -1.00 -65.29 280.91 -1.26 -66.55 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.42 Total: 10.89 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 2.95 Total: -26.02 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -5.82 Total: -98.21 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.29 -1.26 -66.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044531211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.663 kcal (2) G-P(sol) polarization free energy of solvation -65.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds